Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1154

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1152 and DVU1153 are separated by 128 nucleotidesDVU1153 and DVU1154 are separated by 54 nucleotidesDVU1154 and DVU1155 are separated by 66 nucleotidesDVU1155 and DVU1156 are separated by 63 nucleotides DVU1152: DVU1152 - hypothetical protein (TIGR), at 1,246,091 to 1,246,705 DVU1152 DVU1153: DVU1153 - hypothetical protein (TIGR), at 1,246,834 to 1,246,944 DVU1153 DVU1154: DVU1154 - hypothetical protein (TIGR), at 1,246,999 to 1,247,136 DVU1154 DVU1155: DVU1155 - hypothetical protein (TIGR), at 1,247,203 to 1,247,307 DVU1155 DVU1156: DVU1156 - sigma-54 dependent transcriptional regulator, putative/response regulator (TIGR), at 1,247,371 to 1,248,810 DVU1156 Position (kb) 1246 1247 1248Strain fitness (log2 ratio) -2 -1 0 1at 1246.030 kb on - strandat 1246.048 kb on - strandat 1246.101 kb on - strandat 1246.128 kb on - strandat 1246.176 kb on + strand, within DVU1152at 1246.176 kb on + strand, within DVU1152at 1246.176 kb on + strand, within DVU1152at 1246.176 kb on + strand, within DVU1152at 1246.184 kb on - strand, within DVU1152at 1246.184 kb on - strand, within DVU1152at 1246.291 kb on + strand, within DVU1152at 1246.373 kb on + strand, within DVU1152at 1246.425 kb on - strand, within DVU1152at 1246.473 kb on + strand, within DVU1152at 1246.481 kb on - strand, within DVU1152at 1246.527 kb on - strand, within DVU1152at 1246.551 kb on + strand, within DVU1152at 1246.607 kb on - strand, within DVU1152at 1246.615 kb on + strand, within DVU1152at 1246.620 kb on + strand, within DVU1152at 1246.650 kb on + strandat 1246.769 kb on + strandat 1246.888 kb on + strand, within DVU1153at 1246.943 kb on + strandat 1246.959 kb on + strandat 1246.959 kb on + strandat 1246.959 kb on + strandat 1247.015 kb on + strand, within DVU1154at 1247.733 kb on - strand, within DVU1156at 1247.863 kb on + strand, within DVU1156at 1247.893 kb on - strand, within DVU1156at 1247.900 kb on - strand, within DVU1156at 1248.014 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.125 kb on + strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.133 kb on - strand, within DVU1156at 1248.133 kb on - strand, within DVU1156

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,246,030 - +0.1
1,246,048 - +1.5
1,246,101 - +0.9
1,246,128 - +0.9
1,246,176 + DVU1152 0.14 +0.3
1,246,176 + DVU1152 0.14 -0.1
1,246,176 + DVU1152 0.14 -1.7
1,246,176 + DVU1152 0.14 +0.3
1,246,184 - DVU1152 0.15 -0.8
1,246,184 - DVU1152 0.15 +0.2
1,246,291 + DVU1152 0.33 -0.9
1,246,373 + DVU1152 0.46 -0.4
1,246,425 - DVU1152 0.54 -0.2
1,246,473 + DVU1152 0.62 +1.6
1,246,481 - DVU1152 0.63 -0.6
1,246,527 - DVU1152 0.71 -0.4
1,246,551 + DVU1152 0.75 -0.5
1,246,607 - DVU1152 0.84 -0.6
1,246,615 + DVU1152 0.85 +1.3
1,246,620 + DVU1152 0.86 -0.9
1,246,650 + -1.1
1,246,769 + -1.5
1,246,888 + DVU1153 0.49 -0.7
1,246,943 + +0.3
1,246,959 + -1.1
1,246,959 + +0.5
1,246,959 + -0.2
1,247,015 + DVU1154 0.12 -1.0
1,247,733 - DVU1156 0.25 -0.3
1,247,863 + DVU1156 0.34 +1.2
1,247,893 - DVU1156 0.36 +0.1
1,247,900 - DVU1156 0.37 +0.6
1,248,014 + DVU1156 0.45 +0.2
1,248,125 + DVU1156 0.52 -0.3
1,248,125 + DVU1156 0.52 -0.3
1,248,125 + DVU1156 0.52 -1.5
1,248,125 + DVU1156 0.52 -0.3
1,248,125 + DVU1156 0.52 +0.3
1,248,125 + DVU1156 0.52 -2.2
1,248,133 - DVU1156 0.53 -1.2
1,248,133 - DVU1156 0.53 +0.8
1,248,133 - DVU1156 0.53 +0.3
1,248,133 - DVU1156 0.53 -0.2
1,248,133 - DVU1156 0.53 -0.0
1,248,133 - DVU1156 0.53 -1.6

Or see this region's nucleotide sequence