Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0945

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0943 and DVU0944 are separated by 53 nucleotidesDVU0944 and DVU0945 are separated by 85 nucleotidesDVU0945 and DVU0946 are separated by 2 nucleotides DVU0943: DVU0943 - membrane protein, putative (TIGR), at 1,035,421 to 1,037,160 DVU0943 DVU0944: DVU0944 - hypothetical protein (TIGR), at 1,037,214 to 1,037,471 DVU0944 DVU0945: DVU0945 - sensor histidine kinase (TIGR), at 1,037,557 to 1,039,989 DVU0945 DVU0946: DVU0946 - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 1,039,992 to 1,041,422 DVU0946 Position (kb) 1037 1038 1039 1040Strain fitness (log2 ratio) -2 -1 0 1 2at 1036.557 kb on - strand, within DVU0943at 1036.625 kb on + strand, within DVU0943at 1036.625 kb on + strand, within DVU0943at 1036.833 kb on - strand, within DVU0943at 1036.912 kb on - strand, within DVU0943at 1036.920 kb on + strand, within DVU0943at 1036.920 kb on + strand, within DVU0943at 1036.941 kb on + strand, within DVU0943at 1036.947 kb on - strand, within DVU0943at 1037.069 kb on + strandat 1037.081 kb on + strandat 1037.081 kb on + strandat 1037.129 kb on - strandat 1037.222 kb on + strandat 1037.341 kb on - strand, within DVU0944at 1037.371 kb on - strand, within DVU0944at 1037.371 kb on - strand, within DVU0944at 1037.417 kb on - strand, within DVU0944at 1037.452 kb on + strandat 1037.611 kb on - strandat 1037.643 kb on - strandat 1037.686 kb on + strandat 1037.688 kb on - strandat 1037.736 kb on - strandat 1037.736 kb on - strandat 1037.766 kb on + strandat 1037.891 kb on + strand, within DVU0945at 1037.999 kb on - strand, within DVU0945at 1038.042 kb on + strand, within DVU0945at 1038.045 kb on - strand, within DVU0945at 1038.086 kb on - strand, within DVU0945at 1038.183 kb on + strand, within DVU0945at 1038.189 kb on - strand, within DVU0945at 1038.191 kb on - strand, within DVU0945at 1038.191 kb on - strand, within DVU0945at 1038.486 kb on - strand, within DVU0945at 1038.498 kb on - strand, within DVU0945at 1038.544 kb on + strand, within DVU0945at 1038.609 kb on - strand, within DVU0945at 1038.671 kb on + strand, within DVU0945at 1038.673 kb on + strand, within DVU0945at 1038.679 kb on - strand, within DVU0945at 1038.795 kb on - strand, within DVU0945at 1038.835 kb on + strand, within DVU0945at 1038.855 kb on + strand, within DVU0945at 1038.863 kb on - strand, within DVU0945at 1039.112 kb on - strand, within DVU0945at 1039.157 kb on - strand, within DVU0945at 1039.187 kb on - strand, within DVU0945at 1039.189 kb on + strand, within DVU0945at 1039.202 kb on - strand, within DVU0945at 1039.361 kb on + strand, within DVU0945at 1039.366 kb on + strand, within DVU0945at 1039.376 kb on + strand, within DVU0945at 1039.507 kb on - strand, within DVU0945at 1039.707 kb on + strand, within DVU0945at 1039.712 kb on + strand, within DVU0945at 1039.740 kb on - strand, within DVU0945at 1039.766 kb on - strandat 1039.781 kb on + strandat 1039.820 kb on - strandat 1039.827 kb on + strandat 1039.845 kb on - strandat 1039.863 kb on - strandat 1039.912 kb on - strandat 1040.049 kb on - strandat 1040.129 kb on - strandat 1040.185 kb on + strand, within DVU0946at 1040.360 kb on - strand, within DVU0946at 1040.656 kb on - strand, within DVU0946at 1040.656 kb on - strand, within DVU0946at 1040.660 kb on + strand, within DVU0946at 1040.785 kb on + strand, within DVU0946

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,036,557 - DVU0943 0.65 -0.2
1,036,625 + DVU0943 0.69 -0.6
1,036,625 + DVU0943 0.69 -0.9
1,036,833 - DVU0943 0.81 -0.1
1,036,912 - DVU0943 0.86 +0.8
1,036,920 + DVU0943 0.86 +0.6
1,036,920 + DVU0943 0.86 -0.2
1,036,941 + DVU0943 0.87 -1.6
1,036,947 - DVU0943 0.88 -0.2
1,037,069 + -0.8
1,037,081 + -0.2
1,037,081 + +0.2
1,037,129 - -0.4
1,037,222 + +0.2
1,037,341 - DVU0944 0.49 -0.7
1,037,371 - DVU0944 0.61 +0.5
1,037,371 - DVU0944 0.61 -1.2
1,037,417 - DVU0944 0.79 -0.6
1,037,452 + +0.1
1,037,611 - -0.6
1,037,643 - -2.3
1,037,686 + +0.7
1,037,688 - +0.5
1,037,736 - +0.3
1,037,736 - -1.2
1,037,766 + +0.9
1,037,891 + DVU0945 0.14 +0.0
1,037,999 - DVU0945 0.18 -0.2
1,038,042 + DVU0945 0.20 -0.2
1,038,045 - DVU0945 0.20 -0.7
1,038,086 - DVU0945 0.22 +0.1
1,038,183 + DVU0945 0.26 -0.6
1,038,189 - DVU0945 0.26 +0.2
1,038,191 - DVU0945 0.26 -0.2
1,038,191 - DVU0945 0.26 +0.3
1,038,486 - DVU0945 0.38 -0.8
1,038,498 - DVU0945 0.39 +0.2
1,038,544 + DVU0945 0.41 -0.7
1,038,609 - DVU0945 0.43 -0.3
1,038,671 + DVU0945 0.46 -0.7
1,038,673 + DVU0945 0.46 -1.6
1,038,679 - DVU0945 0.46 -0.1
1,038,795 - DVU0945 0.51 -0.5
1,038,835 + DVU0945 0.53 +1.1
1,038,855 + DVU0945 0.53 -0.5
1,038,863 - DVU0945 0.54 -0.7
1,039,112 - DVU0945 0.64 -0.8
1,039,157 - DVU0945 0.66 -0.7
1,039,187 - DVU0945 0.67 -1.0
1,039,189 + DVU0945 0.67 +0.1
1,039,202 - DVU0945 0.68 -0.2
1,039,361 + DVU0945 0.74 -0.4
1,039,366 + DVU0945 0.74 +1.0
1,039,376 + DVU0945 0.75 -0.4
1,039,507 - DVU0945 0.80 +0.1
1,039,707 + DVU0945 0.88 +0.5
1,039,712 + DVU0945 0.89 +0.2
1,039,740 - DVU0945 0.90 -0.1
1,039,766 - -0.9
1,039,781 + +2.0
1,039,820 - -0.5
1,039,827 + -0.8
1,039,845 - +0.2
1,039,863 - +0.3
1,039,912 - -0.6
1,040,049 - -0.6
1,040,129 - +0.6
1,040,185 + DVU0946 0.13 -0.3
1,040,360 - DVU0946 0.26 -1.6
1,040,656 - DVU0946 0.46 -0.1
1,040,656 - DVU0946 0.46 +1.0
1,040,660 + DVU0946 0.47 -0.4
1,040,785 + DVU0946 0.55 +0.4

Or see this region's nucleotide sequence