Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0937

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0935 and DVU0936 are separated by 632 nucleotidesDVU0936 and DVU0937 are separated by 13 nucleotidesDVU0937 and DVU0938 are separated by 63 nucleotidesDVU0938 and DVU0939 are separated by 399 nucleotides DVU0935: DVU0935 - methyl-accepting chemotaxis protein (TIGR), at 1,025,021 to 1,027,525 DVU0935 DVU0936: DVU0936 - hypothetical protein (TIGR), at 1,028,158 to 1,028,445 DVU0936 DVU0937: DVU0937 - hypothetical protein (TIGR), at 1,028,459 to 1,028,845 DVU0937 DVU0938: DVU0938 - isoamylase N-terminal domain protein (TIGR), at 1,028,909 to 1,029,277 DVU0938 DVU0939: DVU0939 - conserved hypothetical protein (TIGR), at 1,029,677 to 1,030,426 DVU0939 Position (kb) 1028 1029Strain fitness (log2 ratio) -2 -1 0 1 2at 1027.462 kb on + strandat 1027.470 kb on - strandat 1027.552 kb on - strandat 1027.602 kb on + strandat 1027.734 kb on + strandat 1027.737 kb on - strandat 1027.737 kb on - strandat 1027.737 kb on - strandat 1027.861 kb on - strandat 1028.013 kb on + strandat 1028.021 kb on - strandat 1028.029 kb on + strandat 1028.150 kb on - strandat 1028.153 kb on + strandat 1028.189 kb on - strand, within DVU0936at 1028.241 kb on - strand, within DVU0936at 1028.302 kb on - strand, within DVU0936at 1028.312 kb on - strand, within DVU0936at 1028.312 kb on - strand, within DVU0936at 1028.314 kb on + strand, within DVU0936at 1028.314 kb on + strand, within DVU0936at 1028.314 kb on + strand, within DVU0936at 1028.484 kb on - strandat 1028.516 kb on + strand, within DVU0937at 1028.660 kb on + strand, within DVU0937at 1028.747 kb on - strand, within DVU0937at 1028.997 kb on - strand, within DVU0938at 1029.049 kb on + strand, within DVU0938at 1029.097 kb on + strand, within DVU0938at 1029.157 kb on - strand, within DVU0938at 1029.412 kb on + strandat 1029.449 kb on - strandat 1029.511 kb on + strandat 1029.529 kb on - strandat 1029.558 kb on - strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.634 kb on - strandat 1029.636 kb on - strandat 1029.696 kb on + strandat 1029.696 kb on + strandat 1029.704 kb on - strandat 1029.704 kb on - strandat 1029.717 kb on - strandat 1029.724 kb on - strandat 1029.760 kb on + strand, within DVU0939at 1029.788 kb on + strand, within DVU0939at 1029.820 kb on - strand, within DVU0939

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,027,462 + +0.3
1,027,470 - -1.8
1,027,552 - +0.6
1,027,602 + -2.1
1,027,734 + -1.4
1,027,737 - -0.1
1,027,737 - +0.1
1,027,737 - +2.0
1,027,861 - +0.8
1,028,013 + +1.0
1,028,021 - -0.2
1,028,029 + -2.5
1,028,150 - +0.1
1,028,153 + +1.1
1,028,189 - DVU0936 0.11 +0.7
1,028,241 - DVU0936 0.29 -2.7
1,028,302 - DVU0936 0.50 -1.0
1,028,312 - DVU0936 0.53 -1.2
1,028,312 - DVU0936 0.53 +1.5
1,028,314 + DVU0936 0.54 +0.2
1,028,314 + DVU0936 0.54 +0.4
1,028,314 + DVU0936 0.54 -0.3
1,028,484 - +0.3
1,028,516 + DVU0937 0.15 -0.5
1,028,660 + DVU0937 0.52 -1.2
1,028,747 - DVU0937 0.74 -2.0
1,028,997 - DVU0938 0.24 +2.4
1,029,049 + DVU0938 0.38 -0.6
1,029,097 + DVU0938 0.51 -0.4
1,029,157 - DVU0938 0.67 +0.1
1,029,412 + -0.1
1,029,449 - -0.5
1,029,511 + -0.3
1,029,529 - -0.2
1,029,558 - -0.2
1,029,626 + +1.1
1,029,626 + -1.9
1,029,626 + +0.7
1,029,626 + +0.3
1,029,626 + -1.2
1,029,626 + +0.8
1,029,626 + -0.2
1,029,634 - -1.1
1,029,634 - -0.9
1,029,634 - -0.2
1,029,634 - +1.7
1,029,634 - +1.0
1,029,634 - +1.7
1,029,634 - +0.0
1,029,634 - +0.7
1,029,636 - +1.4
1,029,696 + -0.7
1,029,696 + +0.2
1,029,704 - -0.4
1,029,704 - -2.0
1,029,717 - -0.2
1,029,724 - +0.6
1,029,760 + DVU0939 0.11 -2.0
1,029,788 + DVU0939 0.15 +0.4
1,029,820 - DVU0939 0.19 -0.0

Or see this region's nucleotide sequence