Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF43335

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2707 and DVU2708 are separated by 164 nucleotidesDVU2708 and DORF43335 are separated by 134 nucleotidesDORF43335 and DVU2710 are separated by 56 nucleotides DVU2707: DVU2707 - virion morphogenesis protein (TIGR), at 2,814,228 to 2,815,478 DVU2707 DVU2708: DVU2708 - virion morphogenesis protein (TIGR), at 2,815,643 to 2,816,131 DVU2708 DORF43335: DORF43335 - no description, at 2,816,266 to 2,816,802 DORF43335 DVU2710: DVU2710 - conserved hypothetical protein (TIGR), at 2,816,859 to 2,818,019 DVU2710 Position (kb) 2816 2817Strain fitness (log2 ratio) -2 -1 0 1at 2815.288 kb on - strand, within DVU2707at 2815.347 kb on - strand, within DVU2707at 2815.372 kb on + strandat 2815.410 kb on - strandat 2815.574 kb on + strandat 2815.574 kb on + strandat 2815.665 kb on - strandat 2815.665 kb on - strandat 2815.690 kb on - strandat 2815.721 kb on + strand, within DVU2708at 2815.727 kb on - strand, within DVU2708at 2815.728 kb on + strand, within DVU2708at 2815.735 kb on - strand, within DVU2708at 2815.781 kb on - strand, within DVU2708at 2815.871 kb on - strand, within DVU2708at 2815.877 kb on - strand, within DVU2708at 2815.882 kb on + strand, within DVU2708at 2815.884 kb on - strand, within DVU2708at 2815.956 kb on - strand, within DVU2708at 2815.957 kb on - strand, within DVU2708at 2815.964 kb on + strand, within DVU2708at 2815.969 kb on + strand, within DVU2708at 2815.977 kb on - strand, within DVU2708at 2815.977 kb on - strand, within DVU2708at 2816.081 kb on + strand, within DVU2708at 2816.126 kb on + strandat 2816.720 kb on + strand, within DORF43335at 2816.805 kb on - strandat 2816.805 kb on - strandat 2816.851 kb on - strandat 2816.998 kb on + strand, within DVU2710at 2817.144 kb on + strand, within DVU2710at 2817.213 kb on - strand, within DVU2710at 2817.288 kb on + strand, within DVU2710at 2817.318 kb on + strand, within DVU2710at 2817.318 kb on + strand, within DVU2710at 2817.318 kb on + strand, within DVU2710at 2817.326 kb on - strand, within DVU2710at 2817.326 kb on - strand, within DVU2710at 2817.326 kb on - strand, within DVU2710at 2817.326 kb on - strand, within DVU2710at 2817.339 kb on + strand, within DVU2710at 2817.387 kb on + strand, within DVU2710at 2817.403 kb on - strand, within DVU2710at 2817.403 kb on - strand, within DVU2710at 2817.580 kb on + strand, within DVU2710at 2817.580 kb on + strand, within DVU2710at 2817.580 kb on + strand, within DVU2710at 2817.586 kb on - strand, within DVU2710at 2817.614 kb on - strand, within DVU2710at 2817.628 kb on + strand, within DVU2710at 2817.642 kb on - strand, within DVU2710at 2817.651 kb on + strand, within DVU2710at 2817.777 kb on + strand, within DVU2710

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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2,815,288 - DVU2707 0.85 -0.6
2,815,347 - DVU2707 0.89 +1.6
2,815,372 + -2.5
2,815,410 - -0.8
2,815,574 + -0.8
2,815,574 + +0.5
2,815,665 - -0.9
2,815,665 - -1.1
2,815,690 - +0.6
2,815,721 + DVU2708 0.16 -0.3
2,815,727 - DVU2708 0.17 -1.8
2,815,728 + DVU2708 0.17 -0.0
2,815,735 - DVU2708 0.19 -0.5
2,815,781 - DVU2708 0.28 +0.0
2,815,871 - DVU2708 0.47 +0.3
2,815,877 - DVU2708 0.48 +0.5
2,815,882 + DVU2708 0.49 +0.2
2,815,884 - DVU2708 0.49 -0.5
2,815,956 - DVU2708 0.64 +0.7
2,815,957 - DVU2708 0.64 +0.1
2,815,964 + DVU2708 0.66 +0.1
2,815,969 + DVU2708 0.67 +0.4
2,815,977 - DVU2708 0.68 -0.1
2,815,977 - DVU2708 0.68 -1.6
2,816,081 + DVU2708 0.90 +0.6
2,816,126 + -0.6
2,816,720 + DORF43335 0.85 +0.3
2,816,805 - -0.5
2,816,805 - -1.7
2,816,851 - -0.8
2,816,998 + DVU2710 0.12 -0.1
2,817,144 + DVU2710 0.25 +0.3
2,817,213 - DVU2710 0.30 -1.2
2,817,288 + DVU2710 0.37 -0.1
2,817,318 + DVU2710 0.40 -0.2
2,817,318 + DVU2710 0.40 +0.2
2,817,318 + DVU2710 0.40 -1.5
2,817,326 - DVU2710 0.40 -1.0
2,817,326 - DVU2710 0.40 -0.7
2,817,326 - DVU2710 0.40 -0.3
2,817,326 - DVU2710 0.40 -1.8
2,817,339 + DVU2710 0.41 +1.7
2,817,387 + DVU2710 0.45 -1.5
2,817,403 - DVU2710 0.47 -0.3
2,817,403 - DVU2710 0.47 +0.2
2,817,580 + DVU2710 0.62 -1.4
2,817,580 + DVU2710 0.62 -0.1
2,817,580 + DVU2710 0.62 +0.2
2,817,586 - DVU2710 0.63 -0.2
2,817,614 - DVU2710 0.65 +1.6
2,817,628 + DVU2710 0.66 -0.7
2,817,642 - DVU2710 0.67 -0.0
2,817,651 + DVU2710 0.68 -0.9
2,817,777 + DVU2710 0.79 -0.8

Or see this region's nucleotide sequence