Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.935.1 and Xcc-8004.936.1 overlap by 4 nucleotides Xcc-8004.936.1 and Xcc-8004.937.1 are separated by 44 nucleotides Xcc-8004.937.1 and Xcc-8004.938.1 are separated by 60 nucleotides
Xcc-8004.935.1: Xcc-8004.935.1 - COG1565: Uncharacterized conserved protein, at 878,188 to 879,372
Xcc-8004.935.1
Xcc-8004.936.1: Xcc-8004.936.1 - FIG01209778: hypothetical protein, at 879,369 to 879,773
Xcc-8004.936.1
Xcc-8004.937.1: Xcc-8004.937.1 - Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2), at 879,818 to 880,684
Xcc-8004.937.1
Xcc-8004.938.1: Xcc-8004.938.1 - FIG01211282: hypothetical protein, at 880,745 to 882,343
Xcc-8004.938.1
Position (kb) 879
880
881 Strain fitness (log2 ratio) -2
-1
0
1
2 at 879.368 kb on + strand at 879.368 kb on + strand at 879.589 kb on + strand, within Xcc-8004.936.1 at 879.663 kb on + strand, within Xcc-8004.936.1 at 879.664 kb on - strand, within Xcc-8004.936.1 at 879.772 kb on - strand at 879.933 kb on + strand, within Xcc-8004.937.1 at 879.934 kb on - strand, within Xcc-8004.937.1 at 880.026 kb on + strand, within Xcc-8004.937.1 at 880.026 kb on + strand, within Xcc-8004.937.1 at 880.102 kb on - strand, within Xcc-8004.937.1 at 880.102 kb on - strand, within Xcc-8004.937.1 at 880.108 kb on - strand, within Xcc-8004.937.1 at 880.108 kb on - strand, within Xcc-8004.937.1 at 880.137 kb on + strand, within Xcc-8004.937.1 at 880.137 kb on + strand, within Xcc-8004.937.1 at 880.138 kb on - strand, within Xcc-8004.937.1 at 880.145 kb on + strand, within Xcc-8004.937.1 at 880.217 kb on + strand, within Xcc-8004.937.1 at 880.218 kb on - strand, within Xcc-8004.937.1 at 880.218 kb on - strand, within Xcc-8004.937.1 at 880.218 kb on - strand, within Xcc-8004.937.1 at 880.412 kb on + strand, within Xcc-8004.937.1 at 880.413 kb on - strand, within Xcc-8004.937.1 at 880.691 kb on - strand at 880.762 kb on + strand at 880.762 kb on + strand at 880.764 kb on + strand at 880.764 kb on + strand at 880.764 kb on + strand at 880.765 kb on - strand at 880.765 kb on - strand at 880.765 kb on - strand at 880.840 kb on + strand at 880.891 kb on + strand at 880.891 kb on + strand at 880.891 kb on + strand at 880.891 kb on + strand at 880.891 kb on + strand at 880.892 kb on - strand at 880.892 kb on - strand at 880.892 kb on - strand at 881.184 kb on - strand, within Xcc-8004.938.1 at 881.294 kb on + strand, within Xcc-8004.938.1 at 881.294 kb on + strand, within Xcc-8004.938.1 at 881.295 kb on - strand, within Xcc-8004.938.1 at 881.295 kb on - strand, within Xcc-8004.938.1 at 881.316 kb on - strand, within Xcc-8004.938.1 at 881.316 kb on - strand, within Xcc-8004.938.1 at 881.540 kb on + strand, within Xcc-8004.938.1 at 881.597 kb on + strand, within Xcc-8004.938.1 at 881.598 kb on - strand, within Xcc-8004.938.1 at 881.598 kb on - strand, within Xcc-8004.938.1 at 881.598 kb on - strand, within Xcc-8004.938.1 at 881.598 kb on - strand, within Xcc-8004.938.1 at 881.678 kb on + strand, within Xcc-8004.938.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 879,368 + -0.7 879,368 + +0.5 879,589 + Xcc-8004.936.1 0.54 -0.5 879,663 + Xcc-8004.936.1 0.73 +0.2 879,664 - Xcc-8004.936.1 0.73 +0.7 879,772 - -0.4 879,933 + Xcc-8004.937.1 0.13 -0.4 879,934 - Xcc-8004.937.1 0.13 +0.3 880,026 + Xcc-8004.937.1 0.24 -0.6 880,026 + Xcc-8004.937.1 0.24 -0.8 880,102 - Xcc-8004.937.1 0.33 -0.6 880,102 - Xcc-8004.937.1 0.33 -1.0 880,108 - Xcc-8004.937.1 0.33 -0.7 880,108 - Xcc-8004.937.1 0.33 +0.6 880,137 + Xcc-8004.937.1 0.37 -1.1 880,137 + Xcc-8004.937.1 0.37 +0.3 880,138 - Xcc-8004.937.1 0.37 -0.2 880,145 + Xcc-8004.937.1 0.38 -0.3 880,217 + Xcc-8004.937.1 0.46 -0.6 880,218 - Xcc-8004.937.1 0.46 -1.7 880,218 - Xcc-8004.937.1 0.46 -1.5 880,218 - Xcc-8004.937.1 0.46 +0.0 880,412 + Xcc-8004.937.1 0.69 -0.9 880,413 - Xcc-8004.937.1 0.69 +0.9 880,691 - -0.1 880,762 + -1.1 880,762 + -1.4 880,764 + +1.6 880,764 + -0.2 880,764 + -1.2 880,765 - +0.1 880,765 - -1.9 880,765 - +0.1 880,840 + +2.1 880,891 + -0.9 880,891 + +0.3 880,891 + -0.5 880,891 + -1.4 880,891 + +0.1 880,892 - -0.1 880,892 - +0.2 880,892 - +0.0 881,184 - Xcc-8004.938.1 0.27 +0.6 881,294 + Xcc-8004.938.1 0.34 +0.3 881,294 + Xcc-8004.938.1 0.34 +0.3 881,295 - Xcc-8004.938.1 0.34 +1.1 881,295 - Xcc-8004.938.1 0.34 -1.5 881,316 - Xcc-8004.938.1 0.36 -1.0 881,316 - Xcc-8004.938.1 0.36 +0.5 881,540 + Xcc-8004.938.1 0.50 +1.4 881,597 + Xcc-8004.938.1 0.53 -0.1 881,598 - Xcc-8004.938.1 0.53 -0.1 881,598 - Xcc-8004.938.1 0.53 -0.2 881,598 - Xcc-8004.938.1 0.53 -0.7 881,598 - Xcc-8004.938.1 0.53 -0.2 881,678 + Xcc-8004.938.1 0.58 +0.8
Or see this region's nucleotide sequence