Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.887.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.885.1 and Xcc-8004.887.1 overlap by 4 nucleotidesXcc-8004.887.1 and Xcc-8004.889.1 are separated by 396 nucleotides Xcc-8004.885.1: Xcc-8004.885.1 - Penicillin-binding protein 2 (PBP-2), at 833,235 to 835,295 Xcc-8004.885.1 Xcc-8004.887.1: Xcc-8004.887.1 - Rod shape-determining protein RodA, at 835,292 to 836,410 Xcc-8004.887.1 Xcc-8004.889.1: Xcc-8004.889.1 - Type IV secretion system protein VirD4, at 836,807 to 837,520 Xcc-8004.889.1 Position (kb) 835 836 837Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 836.434 kb on + strandat 836.506 kb on + strandat 836.507 kb on - strandat 836.519 kb on - strandat 836.519 kb on - strandat 836.528 kb on - strandat 836.537 kb on - strandat 836.713 kb on - strandat 836.713 kb on - strandat 836.747 kb on + strandat 836.764 kb on + strandat 836.764 kb on + strandat 836.816 kb on - strandat 836.816 kb on - strandat 836.946 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
remove
836,434 + +0.1
836,506 + -0.0
836,507 - -0.7
836,519 - +0.5
836,519 - +0.3
836,528 - +0.9
836,537 - +1.0
836,713 - -0.4
836,713 - -3.3
836,747 + -0.3
836,764 + -0.4
836,764 + -0.9
836,816 - +0.9
836,816 - -0.1
836,946 - Xcc-8004.889.1 0.19 +1.9
837,013 - Xcc-8004.889.1 0.29 -0.2
837,013 - Xcc-8004.889.1 0.29 -0.2
837,013 - Xcc-8004.889.1 0.29 -0.4

Or see this region's nucleotide sequence