Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5105.1 and Xcc-8004.5106.1 are separated by 77 nucleotides Xcc-8004.5106.1 and Xcc-8004.5107.1 are separated by 268 nucleotides Xcc-8004.5107.1 and Xcc-8004.5108.1 overlap by 52 nucleotides Xcc-8004.5108.1 and Xcc-8004.5110.1 are separated by 403 nucleotides Xcc-8004.5110.1 and Xcc-8004.5112.1 are separated by 100 nucleotides
Xcc-8004.5105.1: Xcc-8004.5105.1 - DNA polymerase I (EC 2.7.7.7), at 4,840,113 to 4,842,896
Xcc-8004.5105.1
Xcc-8004.5106.1: Xcc-8004.5106.1 - FIG01210192: hypothetical protein, at 4,842,974 to 4,843,255
Xcc-8004.5106.1
Xcc-8004.5107.1: Xcc-8004.5107.1 - Uncharacterized protein ImpA, at 4,843,524 to 4,843,643
Xcc-8004.5107.1
Xcc-8004.5108.1: Xcc-8004.5108.1 - Uncharacterized protein ImpA, at 4,843,592 to 4,844,344
Xcc-8004.5108.1
Xcc-8004.5110.1: Xcc-8004.5110.1 - hypothetical protein, at 4,844,748 to 4,845,194
Xcc-8004.5110.1
Xcc-8004.5112.1: Xcc-8004.5112.1 - Nodulation protein L (EC 2.3.1.-), at 4,845,295 to 4,845,894
Xcc-8004.5112.1
Position (kb) 4843
4844
4845 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4842.695 kb on - strand at 4842.886 kb on - strand at 4842.907 kb on + strand at 4842.907 kb on + strand at 4842.908 kb on - strand at 4842.908 kb on - strand at 4842.943 kb on - strand at 4843.109 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.175 kb on + strand, within Xcc-8004.5106.1 at 4843.175 kb on + strand, within Xcc-8004.5106.1 at 4843.176 kb on - strand, within Xcc-8004.5106.1 at 4843.199 kb on - strand, within Xcc-8004.5106.1 at 4843.199 kb on - strand, within Xcc-8004.5106.1 at 4843.199 kb on - strand, within Xcc-8004.5106.1 at 4843.232 kb on + strand at 4843.232 kb on + strand at 4843.232 kb on + strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.296 kb on + strand at 4843.366 kb on + strand at 4843.366 kb on + strand at 4843.366 kb on + strand at 4843.366 kb on + strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.507 kb on + strand at 4843.675 kb on + strand, within Xcc-8004.5108.1 at 4843.675 kb on + strand, within Xcc-8004.5108.1 at 4843.676 kb on - strand, within Xcc-8004.5108.1 at 4843.676 kb on - strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.679 kb on - strand, within Xcc-8004.5108.1 at 4844.370 kb on + strand at 4844.370 kb on + strand at 4844.370 kb on + strand at 4844.371 kb on - strand at 4844.371 kb on - strand at 4844.371 kb on - strand at 4844.426 kb on + strand at 4844.426 kb on + strand at 4844.426 kb on + strand at 4844.426 kb on + strand at 4844.426 kb on + strand at 4844.426 kb on + strand at 4844.427 kb on - strand at 4844.461 kb on + strand at 4844.462 kb on - strand at 4844.462 kb on - strand at 4844.523 kb on + strand at 4844.523 kb on + strand at 4844.523 kb on + strand at 4844.580 kb on + strand at 4844.580 kb on + strand at 4844.580 kb on + strand at 4844.614 kb on + strand at 4844.614 kb on + strand at 4844.614 kb on + strand at 4844.615 kb on - strand at 4844.615 kb on - strand at 4844.677 kb on + strand at 4844.678 kb on - strand at 4844.678 kb on - strand at 4844.696 kb on + strand at 4844.815 kb on - strand, within Xcc-8004.5110.1 at 4845.010 kb on + strand, within Xcc-8004.5110.1 at 4845.055 kb on + strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.182 kb on + strand at 4845.182 kb on + strand at 4845.182 kb on + strand at 4845.182 kb on + strand at 4845.183 kb on - strand at 4845.183 kb on - strand at 4845.183 kb on - strand at 4845.183 kb on - strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.257 kb on + strand at 4845.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,842,695 - -0.0 4,842,886 - -0.8 4,842,907 + -0.5 4,842,907 + -0.5 4,842,908 - +0.4 4,842,908 - -0.0 4,842,943 - -0.0 4,843,109 + Xcc-8004.5106.1 0.48 -0.1 4,843,166 + Xcc-8004.5106.1 0.68 -0.6 4,843,166 + Xcc-8004.5106.1 0.68 -1.2 4,843,166 + Xcc-8004.5106.1 0.68 -0.7 4,843,166 + Xcc-8004.5106.1 0.68 +0.6 4,843,166 + Xcc-8004.5106.1 0.68 -0.6 4,843,166 + Xcc-8004.5106.1 0.68 -0.3 4,843,167 - Xcc-8004.5106.1 0.68 -0.9 4,843,167 - Xcc-8004.5106.1 0.68 -0.3 4,843,167 - Xcc-8004.5106.1 0.68 +0.4 4,843,167 - Xcc-8004.5106.1 0.68 +0.5 4,843,175 + Xcc-8004.5106.1 0.71 -1.0 4,843,175 + Xcc-8004.5106.1 0.71 -0.3 4,843,176 - Xcc-8004.5106.1 0.72 -0.3 4,843,199 - Xcc-8004.5106.1 0.80 +0.0 4,843,199 - Xcc-8004.5106.1 0.80 -0.4 4,843,199 - Xcc-8004.5106.1 0.80 -0.0 4,843,232 + -0.7 4,843,232 + -0.8 4,843,232 + +1.0 4,843,233 - +1.0 4,843,233 - +1.5 4,843,233 - +1.0 4,843,233 - +1.0 4,843,233 - +0.7 4,843,233 - -0.0 4,843,233 - -0.4 4,843,244 + -0.0 4,843,244 + +0.1 4,843,244 + +1.0 4,843,244 + -0.8 4,843,244 + -0.3 4,843,244 + +1.5 4,843,244 + -0.0 4,843,244 + +0.7 4,843,244 + +0.6 4,843,244 + -0.7 4,843,244 + +1.0 4,843,244 + -0.0 4,843,244 + +0.2 4,843,244 + +0.2 4,843,244 + -0.6 4,843,244 + +0.2 4,843,244 + -0.6 4,843,244 + -1.3 4,843,244 + -0.0 4,843,244 + -0.6 4,843,244 + -0.1 4,843,244 + +0.5 4,843,244 + -0.0 4,843,244 + -1.5 4,843,245 - -0.6 4,843,245 - +0.1 4,843,245 - +0.4 4,843,245 - +0.2 4,843,245 - -1.6 4,843,245 - -0.3 4,843,245 - +0.7 4,843,245 - -0.6 4,843,245 - -0.9 4,843,245 - -0.8 4,843,245 - -0.4 4,843,245 - +0.7 4,843,245 - +1.0 4,843,245 - +0.6 4,843,245 - +0.6 4,843,246 + +1.0 4,843,246 + +0.7 4,843,246 + -0.4 4,843,246 + -0.1 4,843,246 + +2.0 4,843,246 + -0.8 4,843,247 - +1.0 4,843,247 - +2.3 4,843,247 - -0.1 4,843,247 - -0.0 4,843,247 - -0.0 4,843,247 - +1.5 4,843,296 + -0.9 4,843,366 + +1.4 4,843,366 + +3.5 4,843,366 + +0.8 4,843,366 + +0.5 4,843,367 - -1.6 4,843,367 - -0.4 4,843,367 - +0.2 4,843,367 - -0.6 4,843,367 - -0.0 4,843,367 - -1.6 4,843,367 - -1.9 4,843,507 + -0.4 4,843,675 + Xcc-8004.5108.1 0.11 -0.2 4,843,675 + Xcc-8004.5108.1 0.11 -1.0 4,843,676 - Xcc-8004.5108.1 0.11 +0.1 4,843,676 - Xcc-8004.5108.1 0.11 +1.2 4,843,678 + Xcc-8004.5108.1 0.11 +1.2 4,843,678 + Xcc-8004.5108.1 0.11 +0.9 4,843,678 + Xcc-8004.5108.1 0.11 -0.8 4,843,678 + Xcc-8004.5108.1 0.11 +0.4 4,843,679 - Xcc-8004.5108.1 0.12 +0.4 4,844,370 + +1.4 4,844,370 + +0.5 4,844,370 + +0.8 4,844,371 - -0.3 4,844,371 - +0.1 4,844,371 - -0.0 4,844,426 + +0.3 4,844,426 + +0.5 4,844,426 + +0.9 4,844,426 + +0.8 4,844,426 + +0.2 4,844,426 + +1.5 4,844,427 - +0.2 4,844,461 + +1.0 4,844,462 - -0.7 4,844,462 - -1.2 4,844,523 + -0.2 4,844,523 + -0.0 4,844,523 + -1.8 4,844,580 + +0.2 4,844,580 + -0.7 4,844,580 + -0.9 4,844,614 + -0.6 4,844,614 + +0.5 4,844,614 + +1.0 4,844,615 - -0.8 4,844,615 - -0.0 4,844,677 + +0.2 4,844,678 - -0.3 4,844,678 - -0.5 4,844,696 + +1.5 4,844,815 - Xcc-8004.5110.1 0.15 -0.3 4,845,010 + Xcc-8004.5110.1 0.59 -0.6 4,845,055 + Xcc-8004.5110.1 0.69 -1.5 4,845,056 - Xcc-8004.5110.1 0.69 -1.8 4,845,056 - Xcc-8004.5110.1 0.69 -1.0 4,845,056 - Xcc-8004.5110.1 0.69 +1.3 4,845,056 - Xcc-8004.5110.1 0.69 +1.4 4,845,056 - Xcc-8004.5110.1 0.69 -0.5 4,845,056 - Xcc-8004.5110.1 0.69 -0.3 4,845,056 - Xcc-8004.5110.1 0.69 -1.5 4,845,056 - Xcc-8004.5110.1 0.69 -0.0 4,845,056 - Xcc-8004.5110.1 0.69 +2.0 4,845,056 - Xcc-8004.5110.1 0.69 +0.0 4,845,182 + +0.7 4,845,182 + +1.0 4,845,182 + -0.8 4,845,182 + +0.8 4,845,183 - +0.8 4,845,183 - +0.7 4,845,183 - -0.7 4,845,183 - -1.3 4,845,190 + -1.8 4,845,190 + -1.0 4,845,190 + +1.0 4,845,190 + +0.6 4,845,190 + +0.8 4,845,190 + +0.0 4,845,190 + +2.4 4,845,190 + +0.0 4,845,190 + +0.2 4,845,190 + -0.4 4,845,191 - -0.6 4,845,191 - +0.5 4,845,191 - +0.2 4,845,191 - -0.9 4,845,191 - -0.6 4,845,191 - -0.6 4,845,191 - +2.2 4,845,191 - +1.0 4,845,191 - +1.0 4,845,191 - -0.0 4,845,257 + -0.2 4,845,257 + +1.2
Or see this region's nucleotide sequence