Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4898.1 and Xcc-8004.4901.1 are separated by 665 nucleotides Xcc-8004.4901.1 and Xcc-8004.4902.1 are separated by 9 nucleotides Xcc-8004.4902.1 and Xcc-8004.4903.1 are separated by 24 nucleotides
Xcc-8004.4898.1: Xcc-8004.4898.1 - Arginyl-tRNA synthetase (EC 6.1.1.19), at 4,657,816 to 4,659,504
Xcc-8004.4898.1
Xcc-8004.4901.1: Xcc-8004.4901.1 - Cell division protein FtsN, at 4,660,170 to 4,660,412
Xcc-8004.4901.1
Xcc-8004.4902.1: Xcc-8004.4902.1 - FIG01211036: hypothetical protein, at 4,660,422 to 4,660,976
Xcc-8004.4902.1
Xcc-8004.4903.1: Xcc-8004.4903.1 - Oxidoreductase, at 4,661,001 to 4,661,756
Xcc-8004.4903.1
Position (kb) 4660
4661 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4659.502 kb on + strand at 4659.502 kb on + strand at 4659.502 kb on + strand at 4659.502 kb on + strand at 4659.502 kb on + strand at 4659.502 kb on + strand at 4659.502 kb on + strand at 4659.502 kb on + strand at 4660.188 kb on + strand at 4660.411 kb on - strand at 4660.541 kb on - strand, within Xcc-8004.4902.1 at 4660.541 kb on - strand, within Xcc-8004.4902.1 at 4660.633 kb on - strand, within Xcc-8004.4902.1 at 4660.641 kb on + strand, within Xcc-8004.4902.1 at 4660.641 kb on + strand, within Xcc-8004.4902.1 at 4660.641 kb on + strand, within Xcc-8004.4902.1 at 4660.860 kb on + strand, within Xcc-8004.4902.1 at 4660.860 kb on + strand, within Xcc-8004.4902.1 at 4660.860 kb on + strand, within Xcc-8004.4902.1 at 4660.860 kb on + strand, within Xcc-8004.4902.1 at 4660.861 kb on - strand, within Xcc-8004.4902.1 at 4660.861 kb on - strand, within Xcc-8004.4902.1 at 4661.421 kb on + strand, within Xcc-8004.4903.1 at 4661.421 kb on + strand, within Xcc-8004.4903.1 at 4661.421 kb on + strand, within Xcc-8004.4903.1 at 4661.421 kb on + strand, within Xcc-8004.4903.1 at 4661.427 kb on + strand, within Xcc-8004.4903.1 at 4661.427 kb on + strand, within Xcc-8004.4903.1 at 4661.427 kb on + strand, within Xcc-8004.4903.1 at 4661.428 kb on - strand, within Xcc-8004.4903.1 at 4661.428 kb on - strand, within Xcc-8004.4903.1 at 4661.446 kb on - strand, within Xcc-8004.4903.1 at 4661.446 kb on - strand, within Xcc-8004.4903.1 at 4661.446 kb on - strand, within Xcc-8004.4903.1 at 4661.446 kb on - strand, within Xcc-8004.4903.1 at 4661.655 kb on + strand, within Xcc-8004.4903.1 at 4661.655 kb on + strand, within Xcc-8004.4903.1 at 4661.656 kb on - strand, within Xcc-8004.4903.1 at 4661.656 kb on - strand, within Xcc-8004.4903.1 at 4661.656 kb on - strand, within Xcc-8004.4903.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,659,502 + -0.3 4,659,502 + -0.5 4,659,502 + -2.7 4,659,502 + -0.9 4,659,502 + -0.7 4,659,502 + -2.0 4,659,502 + -0.6 4,659,502 + -2.3 4,660,188 + +2.0 4,660,411 - +1.4 4,660,541 - Xcc-8004.4902.1 0.21 +1.0 4,660,541 - Xcc-8004.4902.1 0.21 +2.0 4,660,633 - Xcc-8004.4902.1 0.38 +0.0 4,660,641 + Xcc-8004.4902.1 0.39 +0.1 4,660,641 + Xcc-8004.4902.1 0.39 -0.9 4,660,641 + Xcc-8004.4902.1 0.39 -2.0 4,660,860 + Xcc-8004.4902.1 0.79 +0.3 4,660,860 + Xcc-8004.4902.1 0.79 -1.2 4,660,860 + Xcc-8004.4902.1 0.79 -0.8 4,660,860 + Xcc-8004.4902.1 0.79 -1.6 4,660,861 - Xcc-8004.4902.1 0.79 -0.8 4,660,861 - Xcc-8004.4902.1 0.79 -0.8 4,661,421 + Xcc-8004.4903.1 0.56 -1.2 4,661,421 + Xcc-8004.4903.1 0.56 -1.6 4,661,421 + Xcc-8004.4903.1 0.56 +0.1 4,661,421 + Xcc-8004.4903.1 0.56 +0.8 4,661,427 + Xcc-8004.4903.1 0.56 +0.3 4,661,427 + Xcc-8004.4903.1 0.56 -0.2 4,661,427 + Xcc-8004.4903.1 0.56 -1.1 4,661,428 - Xcc-8004.4903.1 0.56 +0.4 4,661,428 - Xcc-8004.4903.1 0.56 -0.1 4,661,446 - Xcc-8004.4903.1 0.59 +0.8 4,661,446 - Xcc-8004.4903.1 0.59 -1.3 4,661,446 - Xcc-8004.4903.1 0.59 -0.9 4,661,446 - Xcc-8004.4903.1 0.59 +0.4 4,661,655 + Xcc-8004.4903.1 0.87 +0.8 4,661,655 + Xcc-8004.4903.1 0.87 +0.2 4,661,656 - Xcc-8004.4903.1 0.87 +0.0 4,661,656 - Xcc-8004.4903.1 0.87 -0.6 4,661,656 - Xcc-8004.4903.1 0.87 -0.3
Or see this region's nucleotide sequence