Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4648.1 and Xcc-8004.4649.1 are separated by 104 nucleotides Xcc-8004.4649.1 and Xcc-8004.4650.1 are separated by 111 nucleotides
Xcc-8004.4648.1: Xcc-8004.4648.1 - Oxidoreductase, at 4,427,502 to 4,428,497
Xcc-8004.4648.1
Xcc-8004.4649.1: Xcc-8004.4649.1 - Glycosyl transferase, family 2, at 4,428,602 to 4,429,297
Xcc-8004.4649.1
Xcc-8004.4650.1: Xcc-8004.4650.1 - Metallopeptidase, at 4,429,409 to 4,431,514
Xcc-8004.4650.1
Position (kb) 4428
4429
4430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4427.670 kb on + strand, within Xcc-8004.4648.1 at 4427.670 kb on + strand, within Xcc-8004.4648.1 at 4427.670 kb on + strand, within Xcc-8004.4648.1 at 4427.670 kb on + strand, within Xcc-8004.4648.1 at 4427.670 kb on + strand, within Xcc-8004.4648.1 at 4427.670 kb on + strand, within Xcc-8004.4648.1 at 4427.671 kb on - strand, within Xcc-8004.4648.1 at 4427.671 kb on - strand, within Xcc-8004.4648.1 at 4427.671 kb on - strand, within Xcc-8004.4648.1 at 4427.671 kb on - strand, within Xcc-8004.4648.1 at 4427.671 kb on - strand, within Xcc-8004.4648.1 at 4427.671 kb on - strand, within Xcc-8004.4648.1 at 4427.671 kb on - strand, within Xcc-8004.4648.1 at 4427.671 kb on - strand, within Xcc-8004.4648.1 at 4427.671 kb on - strand, within Xcc-8004.4648.1 at 4427.671 kb on - strand, within Xcc-8004.4648.1 at 4427.809 kb on - strand, within Xcc-8004.4648.1 at 4427.868 kb on + strand, within Xcc-8004.4648.1 at 4427.868 kb on + strand, within Xcc-8004.4648.1 at 4427.868 kb on + strand, within Xcc-8004.4648.1 at 4427.869 kb on - strand, within Xcc-8004.4648.1 at 4427.869 kb on - strand, within Xcc-8004.4648.1 at 4427.869 kb on - strand, within Xcc-8004.4648.1 at 4427.871 kb on + strand, within Xcc-8004.4648.1 at 4427.871 kb on + strand, within Xcc-8004.4648.1 at 4427.871 kb on + strand, within Xcc-8004.4648.1 at 4428.036 kb on + strand, within Xcc-8004.4648.1 at 4428.036 kb on + strand, within Xcc-8004.4648.1 at 4428.114 kb on + strand, within Xcc-8004.4648.1 at 4428.114 kb on + strand, within Xcc-8004.4648.1 at 4428.114 kb on + strand, within Xcc-8004.4648.1 at 4428.184 kb on - strand, within Xcc-8004.4648.1 at 4428.361 kb on - strand, within Xcc-8004.4648.1 at 4428.361 kb on - strand, within Xcc-8004.4648.1 at 4428.361 kb on - strand, within Xcc-8004.4648.1 at 4428.698 kb on + strand, within Xcc-8004.4649.1 at 4428.698 kb on + strand, within Xcc-8004.4649.1 at 4428.698 kb on + strand, within Xcc-8004.4649.1 at 4428.699 kb on - strand, within Xcc-8004.4649.1 at 4428.863 kb on - strand, within Xcc-8004.4649.1 at 4429.086 kb on - strand, within Xcc-8004.4649.1 at 4429.088 kb on + strand, within Xcc-8004.4649.1 at 4429.089 kb on - strand, within Xcc-8004.4649.1 at 4429.280 kb on + strand at 4429.371 kb on + strand at 4429.371 kb on + strand at 4429.371 kb on + strand at 4429.371 kb on + strand at 4429.371 kb on + strand at 4429.371 kb on + strand at 4429.371 kb on + strand at 4429.372 kb on - strand at 4429.372 kb on - strand at 4429.372 kb on - strand at 4429.610 kb on + strand at 4429.611 kb on - strand at 4429.776 kb on - strand, within Xcc-8004.4650.1 at 4429.776 kb on - strand, within Xcc-8004.4650.1 at 4429.776 kb on - strand, within Xcc-8004.4650.1 at 4429.776 kb on - strand, within Xcc-8004.4650.1 at 4429.778 kb on + strand, within Xcc-8004.4650.1 at 4429.779 kb on - strand, within Xcc-8004.4650.1 at 4429.779 kb on - strand, within Xcc-8004.4650.1 at 4429.787 kb on + strand, within Xcc-8004.4650.1 at 4429.787 kb on + strand, within Xcc-8004.4650.1 at 4429.788 kb on - strand, within Xcc-8004.4650.1 at 4429.788 kb on - strand, within Xcc-8004.4650.1 at 4429.788 kb on - strand, within Xcc-8004.4650.1 at 4429.941 kb on - strand, within Xcc-8004.4650.1 at 4429.941 kb on - strand, within Xcc-8004.4650.1 at 4429.963 kb on - strand, within Xcc-8004.4650.1 at 4429.997 kb on + strand, within Xcc-8004.4650.1 at 4429.997 kb on + strand, within Xcc-8004.4650.1 at 4429.997 kb on + strand, within Xcc-8004.4650.1 at 4429.998 kb on - strand, within Xcc-8004.4650.1 at 4429.998 kb on - strand, within Xcc-8004.4650.1 at 4429.998 kb on - strand, within Xcc-8004.4650.1 at 4429.998 kb on - strand, within Xcc-8004.4650.1 at 4429.998 kb on - strand, within Xcc-8004.4650.1 at 4430.006 kb on + strand, within Xcc-8004.4650.1 at 4430.006 kb on + strand, within Xcc-8004.4650.1 at 4430.007 kb on - strand, within Xcc-8004.4650.1 at 4430.048 kb on + strand, within Xcc-8004.4650.1 at 4430.048 kb on + strand, within Xcc-8004.4650.1 at 4430.048 kb on + strand, within Xcc-8004.4650.1 at 4430.049 kb on - strand, within Xcc-8004.4650.1 at 4430.049 kb on - strand, within Xcc-8004.4650.1 at 4430.049 kb on - strand, within Xcc-8004.4650.1 at 4430.049 kb on - strand, within Xcc-8004.4650.1 at 4430.049 kb on - strand, within Xcc-8004.4650.1 at 4430.096 kb on + strand, within Xcc-8004.4650.1 at 4430.096 kb on + strand, within Xcc-8004.4650.1 at 4430.096 kb on + strand, within Xcc-8004.4650.1 at 4430.096 kb on + strand, within Xcc-8004.4650.1 at 4430.096 kb on + strand, within Xcc-8004.4650.1 at 4430.096 kb on + strand, within Xcc-8004.4650.1 at 4430.097 kb on - strand, within Xcc-8004.4650.1 at 4430.097 kb on - strand, within Xcc-8004.4650.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,427,670 + Xcc-8004.4648.1 0.17 -0.3 4,427,670 + Xcc-8004.4648.1 0.17 +0.1 4,427,670 + Xcc-8004.4648.1 0.17 -0.6 4,427,670 + Xcc-8004.4648.1 0.17 -0.4 4,427,670 + Xcc-8004.4648.1 0.17 -1.2 4,427,670 + Xcc-8004.4648.1 0.17 +1.2 4,427,671 - Xcc-8004.4648.1 0.17 +0.8 4,427,671 - Xcc-8004.4648.1 0.17 +0.0 4,427,671 - Xcc-8004.4648.1 0.17 +0.2 4,427,671 - Xcc-8004.4648.1 0.17 +0.4 4,427,671 - Xcc-8004.4648.1 0.17 -0.6 4,427,671 - Xcc-8004.4648.1 0.17 +0.3 4,427,671 - Xcc-8004.4648.1 0.17 +0.2 4,427,671 - Xcc-8004.4648.1 0.17 +0.6 4,427,671 - Xcc-8004.4648.1 0.17 -0.7 4,427,671 - Xcc-8004.4648.1 0.17 -1.6 4,427,809 - Xcc-8004.4648.1 0.31 -0.0 4,427,868 + Xcc-8004.4648.1 0.37 +0.6 4,427,868 + Xcc-8004.4648.1 0.37 +0.7 4,427,868 + Xcc-8004.4648.1 0.37 +1.0 4,427,869 - Xcc-8004.4648.1 0.37 +0.5 4,427,869 - Xcc-8004.4648.1 0.37 -0.4 4,427,869 - Xcc-8004.4648.1 0.37 +1.0 4,427,871 + Xcc-8004.4648.1 0.37 +1.1 4,427,871 + Xcc-8004.4648.1 0.37 -1.2 4,427,871 + Xcc-8004.4648.1 0.37 -0.9 4,428,036 + Xcc-8004.4648.1 0.54 +0.8 4,428,036 + Xcc-8004.4648.1 0.54 -0.4 4,428,114 + Xcc-8004.4648.1 0.61 -0.4 4,428,114 + Xcc-8004.4648.1 0.61 -0.4 4,428,114 + Xcc-8004.4648.1 0.61 +0.6 4,428,184 - Xcc-8004.4648.1 0.68 -1.4 4,428,361 - Xcc-8004.4648.1 0.86 -0.0 4,428,361 - Xcc-8004.4648.1 0.86 +0.8 4,428,361 - Xcc-8004.4648.1 0.86 +1.1 4,428,698 + Xcc-8004.4649.1 0.14 -0.8 4,428,698 + Xcc-8004.4649.1 0.14 -0.6 4,428,698 + Xcc-8004.4649.1 0.14 -0.3 4,428,699 - Xcc-8004.4649.1 0.14 +0.5 4,428,863 - Xcc-8004.4649.1 0.38 +0.6 4,429,086 - Xcc-8004.4649.1 0.70 -0.5 4,429,088 + Xcc-8004.4649.1 0.70 +0.0 4,429,089 - Xcc-8004.4649.1 0.70 -0.9 4,429,280 + +0.4 4,429,371 + +0.4 4,429,371 + +0.1 4,429,371 + +1.0 4,429,371 + -0.4 4,429,371 + -1.6 4,429,371 + -0.5 4,429,371 + -1.9 4,429,372 - -0.0 4,429,372 - -0.0 4,429,372 - +0.4 4,429,610 + +0.7 4,429,611 - +0.3 4,429,776 - Xcc-8004.4650.1 0.17 +0.3 4,429,776 - Xcc-8004.4650.1 0.17 +0.6 4,429,776 - Xcc-8004.4650.1 0.17 -0.2 4,429,776 - Xcc-8004.4650.1 0.17 +0.0 4,429,778 + Xcc-8004.4650.1 0.18 +0.4 4,429,779 - Xcc-8004.4650.1 0.18 -0.5 4,429,779 - Xcc-8004.4650.1 0.18 +0.2 4,429,787 + Xcc-8004.4650.1 0.18 +1.6 4,429,787 + Xcc-8004.4650.1 0.18 +0.3 4,429,788 - Xcc-8004.4650.1 0.18 -1.6 4,429,788 - Xcc-8004.4650.1 0.18 +0.5 4,429,788 - Xcc-8004.4650.1 0.18 +0.6 4,429,941 - Xcc-8004.4650.1 0.25 -0.2 4,429,941 - Xcc-8004.4650.1 0.25 -0.0 4,429,963 - Xcc-8004.4650.1 0.26 +0.7 4,429,997 + Xcc-8004.4650.1 0.28 +0.7 4,429,997 + Xcc-8004.4650.1 0.28 -0.0 4,429,997 + Xcc-8004.4650.1 0.28 -0.9 4,429,998 - Xcc-8004.4650.1 0.28 +1.5 4,429,998 - Xcc-8004.4650.1 0.28 -0.0 4,429,998 - Xcc-8004.4650.1 0.28 +0.8 4,429,998 - Xcc-8004.4650.1 0.28 +0.4 4,429,998 - Xcc-8004.4650.1 0.28 +1.2 4,430,006 + Xcc-8004.4650.1 0.28 +1.4 4,430,006 + Xcc-8004.4650.1 0.28 -0.3 4,430,007 - Xcc-8004.4650.1 0.28 -0.6 4,430,048 + Xcc-8004.4650.1 0.30 +0.1 4,430,048 + Xcc-8004.4650.1 0.30 -0.0 4,430,048 + Xcc-8004.4650.1 0.30 -0.9 4,430,049 - Xcc-8004.4650.1 0.30 -0.0 4,430,049 - Xcc-8004.4650.1 0.30 +2.0 4,430,049 - Xcc-8004.4650.1 0.30 -0.0 4,430,049 - Xcc-8004.4650.1 0.30 +1.6 4,430,049 - Xcc-8004.4650.1 0.30 +0.4 4,430,096 + Xcc-8004.4650.1 0.33 -1.0 4,430,096 + Xcc-8004.4650.1 0.33 +0.4 4,430,096 + Xcc-8004.4650.1 0.33 -1.2 4,430,096 + Xcc-8004.4650.1 0.33 -1.2 4,430,096 + Xcc-8004.4650.1 0.33 -0.2 4,430,096 + Xcc-8004.4650.1 0.33 -0.4 4,430,097 - Xcc-8004.4650.1 0.33 -1.2 4,430,097 - Xcc-8004.4650.1 0.33 -0.2
Or see this region's nucleotide sequence