Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.433.1 and Xcc-8004.434.1 are separated by 79 nucleotides Xcc-8004.434.1 and Xcc-8004.438.1 are separated by 392 nucleotides Xcc-8004.438.1 and Xcc-8004.439.1 are separated by 119 nucleotides
Xcc-8004.433.1: Xcc-8004.433.1 - Xanthomonadin biosynthesis related protein, at 409,092 to 409,283
Xcc-8004.433.1
Xcc-8004.434.1: Xcc-8004.434.1 - putative; ORF located using Glimmer/Genemark, at 409,363 to 409,809
Xcc-8004.434.1
Xcc-8004.438.1: Xcc-8004.438.1 - hypothetical protein, at 410,202 to 410,423
Xcc-8004.438.1
Xcc-8004.439.1: Xcc-8004.439.1 - putative; ORF located using Glimmer/Genemark, at 410,543 to 411,376
Xcc-8004.439.1
Position (kb) 410
411 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 409.324 kb on + strand at 409.324 kb on + strand at 409.364 kb on + strand at 409.484 kb on + strand, within Xcc-8004.434.1 at 409.484 kb on + strand, within Xcc-8004.434.1 at 409.484 kb on + strand, within Xcc-8004.434.1 at 409.485 kb on - strand, within Xcc-8004.434.1 at 409.485 kb on - strand, within Xcc-8004.434.1 at 409.485 kb on - strand, within Xcc-8004.434.1 at 409.521 kb on + strand, within Xcc-8004.434.1 at 409.523 kb on + strand, within Xcc-8004.434.1 at 409.523 kb on + strand, within Xcc-8004.434.1 at 409.523 kb on + strand, within Xcc-8004.434.1 at 409.523 kb on + strand, within Xcc-8004.434.1 at 409.523 kb on + strand, within Xcc-8004.434.1 at 409.524 kb on - strand, within Xcc-8004.434.1 at 409.524 kb on - strand, within Xcc-8004.434.1 at 409.524 kb on - strand, within Xcc-8004.434.1 at 409.524 kb on - strand, within Xcc-8004.434.1 at 409.542 kb on + strand, within Xcc-8004.434.1 at 409.542 kb on + strand, within Xcc-8004.434.1 at 409.542 kb on + strand, within Xcc-8004.434.1 at 409.543 kb on - strand, within Xcc-8004.434.1 at 409.599 kb on - strand, within Xcc-8004.434.1 at 409.726 kb on + strand, within Xcc-8004.434.1 at 409.794 kb on + strand at 409.794 kb on + strand at 409.795 kb on - strand at 409.795 kb on - strand at 409.795 kb on - strand at 409.829 kb on - strand at 409.841 kb on - strand at 409.881 kb on - strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 410.073 kb on - strand at 410.093 kb on + strand at 410.093 kb on + strand at 410.093 kb on + strand at 410.093 kb on + strand at 410.094 kb on - strand at 410.094 kb on - strand at 410.094 kb on - strand at 410.094 kb on - strand at 410.094 kb on - strand at 410.094 kb on - strand at 410.179 kb on - strand at 410.179 kb on - strand at 410.190 kb on + strand at 410.191 kb on - strand at 410.196 kb on + strand at 410.196 kb on + strand at 410.196 kb on + strand at 410.197 kb on - strand at 410.197 kb on - strand at 410.197 kb on - strand at 410.238 kb on + strand, within Xcc-8004.438.1 at 410.239 kb on - strand, within Xcc-8004.438.1 at 410.243 kb on + strand, within Xcc-8004.438.1 at 410.243 kb on + strand, within Xcc-8004.438.1 at 410.321 kb on - strand, within Xcc-8004.438.1 at 410.380 kb on + strand, within Xcc-8004.438.1 at 410.381 kb on - strand, within Xcc-8004.438.1 at 410.426 kb on + strand at 410.427 kb on - strand at 410.431 kb on - strand at 410.450 kb on + strand at 410.450 kb on + strand at 410.450 kb on + strand at 410.451 kb on - strand at 410.451 kb on - strand at 410.451 kb on - strand at 410.451 kb on - strand at 410.451 kb on - strand at 410.451 kb on - strand at 410.494 kb on + strand at 410.495 kb on - strand at 410.495 kb on - strand at 410.495 kb on - strand at 410.569 kb on - strand at 410.663 kb on - strand, within Xcc-8004.439.1 at 410.693 kb on + strand, within Xcc-8004.439.1 at 410.716 kb on + strand, within Xcc-8004.439.1 at 410.733 kb on + strand, within Xcc-8004.439.1 at 410.734 kb on - strand, within Xcc-8004.439.1 at 410.734 kb on - strand, within Xcc-8004.439.1 at 410.813 kb on + strand, within Xcc-8004.439.1 at 410.882 kb on + strand, within Xcc-8004.439.1 at 410.882 kb on + strand, within Xcc-8004.439.1 at 410.937 kb on + strand, within Xcc-8004.439.1 at 410.937 kb on + strand, within Xcc-8004.439.1 at 410.937 kb on + strand, within Xcc-8004.439.1 at 410.946 kb on + strand, within Xcc-8004.439.1 at 410.994 kb on + strand, within Xcc-8004.439.1 at 410.995 kb on - strand, within Xcc-8004.439.1 at 411.106 kb on - strand, within Xcc-8004.439.1 at 411.146 kb on + strand, within Xcc-8004.439.1 at 411.146 kb on + strand, within Xcc-8004.439.1 at 411.147 kb on - strand, within Xcc-8004.439.1 at 411.148 kb on + strand, within Xcc-8004.439.1 at 411.149 kb on - strand, within Xcc-8004.439.1 at 411.167 kb on - strand, within Xcc-8004.439.1 at 411.167 kb on - strand, within Xcc-8004.439.1 at 411.277 kb on + strand, within Xcc-8004.439.1 at 411.277 kb on + strand, within Xcc-8004.439.1 at 411.277 kb on + strand, within Xcc-8004.439.1 at 411.278 kb on - strand, within Xcc-8004.439.1 at 411.278 kb on - strand, within Xcc-8004.439.1 at 411.278 kb on - strand, within Xcc-8004.439.1 at 411.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 409,324 + +0.4 409,324 + +0.5 409,364 + -0.5 409,484 + Xcc-8004.434.1 0.27 -0.4 409,484 + Xcc-8004.434.1 0.27 -0.1 409,484 + Xcc-8004.434.1 0.27 +0.5 409,485 - Xcc-8004.434.1 0.27 +0.5 409,485 - Xcc-8004.434.1 0.27 -1.4 409,485 - Xcc-8004.434.1 0.27 +0.3 409,521 + Xcc-8004.434.1 0.35 +1.5 409,523 + Xcc-8004.434.1 0.36 -0.2 409,523 + Xcc-8004.434.1 0.36 +0.4 409,523 + Xcc-8004.434.1 0.36 +2.9 409,523 + Xcc-8004.434.1 0.36 +1.2 409,523 + Xcc-8004.434.1 0.36 +0.3 409,524 - Xcc-8004.434.1 0.36 -0.8 409,524 - Xcc-8004.434.1 0.36 -0.9 409,524 - Xcc-8004.434.1 0.36 +0.2 409,524 - Xcc-8004.434.1 0.36 -0.1 409,542 + Xcc-8004.434.1 0.40 -0.7 409,542 + Xcc-8004.434.1 0.40 +0.2 409,542 + Xcc-8004.434.1 0.40 +0.3 409,543 - Xcc-8004.434.1 0.40 +0.2 409,599 - Xcc-8004.434.1 0.53 +0.3 409,726 + Xcc-8004.434.1 0.81 +0.3 409,794 + +1.0 409,794 + +0.1 409,795 - +1.0 409,795 - +1.9 409,795 - -0.1 409,829 - -2.1 409,841 - -1.0 409,881 - -0.2 409,922 + -2.3 409,922 + +0.4 409,922 + -0.3 409,922 + -0.3 409,922 + +0.1 409,923 - +2.0 409,923 - +0.4 409,923 - +0.2 409,923 - -0.4 409,923 - -0.6 409,923 - +0.6 409,923 - -0.8 409,923 - +0.5 409,923 - +0.4 409,923 - -0.4 410,073 - +0.7 410,093 + -0.7 410,093 + -0.2 410,093 + +0.3 410,093 + -0.1 410,094 - -0.1 410,094 - +0.6 410,094 - +0.1 410,094 - -2.3 410,094 - +1.9 410,094 - +1.2 410,179 - -1.4 410,179 - -1.0 410,190 + -0.2 410,191 - -0.4 410,196 + +1.1 410,196 + +0.3 410,196 + -0.3 410,197 - +1.7 410,197 - -1.0 410,197 - -0.1 410,238 + Xcc-8004.438.1 0.16 -0.1 410,239 - Xcc-8004.438.1 0.17 -0.8 410,243 + Xcc-8004.438.1 0.18 -1.0 410,243 + Xcc-8004.438.1 0.18 -0.7 410,321 - Xcc-8004.438.1 0.54 -0.6 410,380 + Xcc-8004.438.1 0.80 +0.3 410,381 - Xcc-8004.438.1 0.81 -0.4 410,426 + -1.7 410,427 - +1.9 410,431 - -0.9 410,450 + +1.4 410,450 + +0.3 410,450 + -0.7 410,451 - -1.6 410,451 - +0.8 410,451 - -1.0 410,451 - -0.5 410,451 - -0.0 410,451 - -1.0 410,494 + -0.7 410,495 - +1.3 410,495 - +0.1 410,495 - -0.6 410,569 - +0.1 410,663 - Xcc-8004.439.1 0.14 -0.6 410,693 + Xcc-8004.439.1 0.18 +0.9 410,716 + Xcc-8004.439.1 0.21 +0.9 410,733 + Xcc-8004.439.1 0.23 -1.5 410,734 - Xcc-8004.439.1 0.23 +0.0 410,734 - Xcc-8004.439.1 0.23 +0.4 410,813 + Xcc-8004.439.1 0.32 -0.0 410,882 + Xcc-8004.439.1 0.41 -0.3 410,882 + Xcc-8004.439.1 0.41 +0.5 410,937 + Xcc-8004.439.1 0.47 +1.3 410,937 + Xcc-8004.439.1 0.47 -0.4 410,937 + Xcc-8004.439.1 0.47 -0.1 410,946 + Xcc-8004.439.1 0.48 -1.0 410,994 + Xcc-8004.439.1 0.54 -0.9 410,995 - Xcc-8004.439.1 0.54 +0.0 411,106 - Xcc-8004.439.1 0.68 -0.7 411,146 + Xcc-8004.439.1 0.72 +0.7 411,146 + Xcc-8004.439.1 0.72 -0.7 411,147 - Xcc-8004.439.1 0.72 -0.1 411,148 + Xcc-8004.439.1 0.73 +0.3 411,149 - Xcc-8004.439.1 0.73 +0.5 411,167 - Xcc-8004.439.1 0.75 +0.0 411,167 - Xcc-8004.439.1 0.75 +0.7 411,277 + Xcc-8004.439.1 0.88 -0.5 411,277 + Xcc-8004.439.1 0.88 +0.1 411,277 + Xcc-8004.439.1 0.88 +0.3 411,278 - Xcc-8004.439.1 0.88 +0.2 411,278 - Xcc-8004.439.1 0.88 -0.4 411,278 - Xcc-8004.439.1 0.88 -0.1 411,355 - +0.1
Or see this region's nucleotide sequence