Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3769.1 and Xcc-8004.3770.1 are separated by 108 nucleotides Xcc-8004.3770.1 and Xcc-8004.3771.1 overlap by 10 nucleotides Xcc-8004.3771.1 and Xcc-8004.3772.1 are separated by 1 nucleotides
Xcc-8004.3769.1: Xcc-8004.3769.1 - SSU ribosomal protein S16p, at 3,642,761 to 3,643,021
Xcc-8004.3769.1
Xcc-8004.3770.1: Xcc-8004.3770.1 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 3,643,130 to 3,643,927
Xcc-8004.3770.1
Xcc-8004.3771.1: Xcc-8004.3771.1 - 2-nitropropane dioxygenase, at 3,643,918 to 3,645,012
Xcc-8004.3771.1
Xcc-8004.3772.1: Xcc-8004.3772.1 - FIG00469906: hypothetical protein, at 3,645,014 to 3,645,853
Xcc-8004.3772.1
Position (kb) 3643
3644
3645
3646 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3643.189 kb on + strand at 3643.189 kb on + strand at 3643.190 kb on - strand at 3643.190 kb on - strand at 3643.190 kb on - strand at 3643.246 kb on + strand, within Xcc-8004.3770.1 at 3643.246 kb on + strand, within Xcc-8004.3770.1 at 3643.247 kb on - strand, within Xcc-8004.3770.1 at 3643.247 kb on - strand, within Xcc-8004.3770.1 at 3643.247 kb on - strand, within Xcc-8004.3770.1 at 3643.274 kb on + strand, within Xcc-8004.3770.1 at 3643.274 kb on + strand, within Xcc-8004.3770.1 at 3643.274 kb on + strand, within Xcc-8004.3770.1 at 3643.274 kb on + strand, within Xcc-8004.3770.1 at 3643.275 kb on - strand, within Xcc-8004.3770.1 at 3643.275 kb on - strand, within Xcc-8004.3770.1 at 3643.551 kb on + strand, within Xcc-8004.3770.1 at 3643.551 kb on + strand, within Xcc-8004.3770.1 at 3643.551 kb on + strand, within Xcc-8004.3770.1 at 3643.551 kb on + strand, within Xcc-8004.3770.1 at 3643.552 kb on - strand, within Xcc-8004.3770.1 at 3643.552 kb on - strand, within Xcc-8004.3770.1 at 3643.552 kb on - strand, within Xcc-8004.3770.1 at 3643.552 kb on - strand, within Xcc-8004.3770.1 at 3643.656 kb on + strand, within Xcc-8004.3770.1 at 3643.656 kb on + strand, within Xcc-8004.3770.1 at 3643.724 kb on + strand, within Xcc-8004.3770.1 at 3643.724 kb on + strand, within Xcc-8004.3770.1 at 3643.724 kb on + strand, within Xcc-8004.3770.1 at 3643.724 kb on + strand, within Xcc-8004.3770.1 at 3643.725 kb on - strand, within Xcc-8004.3770.1 at 3643.858 kb on - strand at 3643.858 kb on - strand at 3643.858 kb on - strand at 3643.858 kb on - strand at 3644.084 kb on - strand, within Xcc-8004.3771.1 at 3644.135 kb on + strand, within Xcc-8004.3771.1 at 3644.135 kb on + strand, within Xcc-8004.3771.1 at 3644.135 kb on + strand, within Xcc-8004.3771.1 at 3644.135 kb on + strand, within Xcc-8004.3771.1 at 3644.136 kb on - strand, within Xcc-8004.3771.1 at 3644.136 kb on - strand, within Xcc-8004.3771.1 at 3644.136 kb on - strand, within Xcc-8004.3771.1 at 3644.136 kb on - strand, within Xcc-8004.3771.1 at 3644.978 kb on + strand at 3644.978 kb on + strand at 3644.979 kb on - strand at 3645.147 kb on + strand, within Xcc-8004.3772.1 at 3645.148 kb on - strand, within Xcc-8004.3772.1 at 3645.148 kb on - strand, within Xcc-8004.3772.1 at 3645.148 kb on - strand, within Xcc-8004.3772.1 at 3645.487 kb on - strand, within Xcc-8004.3772.1 at 3645.487 kb on - strand, within Xcc-8004.3772.1 at 3645.487 kb on - strand, within Xcc-8004.3772.1 at 3645.507 kb on + strand, within Xcc-8004.3772.1 at 3645.507 kb on + strand, within Xcc-8004.3772.1 at 3645.507 kb on + strand, within Xcc-8004.3772.1 at 3645.507 kb on + strand, within Xcc-8004.3772.1 at 3645.507 kb on + strand, within Xcc-8004.3772.1 at 3645.508 kb on - strand, within Xcc-8004.3772.1 at 3645.508 kb on - strand, within Xcc-8004.3772.1 at 3645.508 kb on - strand, within Xcc-8004.3772.1 at 3645.508 kb on - strand, within Xcc-8004.3772.1 at 3645.508 kb on - strand, within Xcc-8004.3772.1 at 3645.508 kb on - strand, within Xcc-8004.3772.1 at 3645.508 kb on - strand, within Xcc-8004.3772.1 at 3645.795 kb on + strand at 3645.795 kb on + strand at 3645.795 kb on + strand at 3645.796 kb on - strand at 3645.796 kb on - strand at 3645.834 kb on + strand at 3645.834 kb on + strand at 3645.835 kb on - strand at 3645.835 kb on - strand at 3645.931 kb on + strand at 3645.931 kb on + strand at 3645.931 kb on + strand at 3645.932 kb on - strand at 3645.958 kb on + strand at 3645.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,643,189 + +1.2 3,643,189 + +0.5 3,643,190 - +0.0 3,643,190 - +0.6 3,643,190 - -0.7 3,643,246 + Xcc-8004.3770.1 0.15 -1.0 3,643,246 + Xcc-8004.3770.1 0.15 +0.3 3,643,247 - Xcc-8004.3770.1 0.15 -0.8 3,643,247 - Xcc-8004.3770.1 0.15 -0.5 3,643,247 - Xcc-8004.3770.1 0.15 +0.0 3,643,274 + Xcc-8004.3770.1 0.18 -0.2 3,643,274 + Xcc-8004.3770.1 0.18 +0.6 3,643,274 + Xcc-8004.3770.1 0.18 -0.3 3,643,274 + Xcc-8004.3770.1 0.18 -0.7 3,643,275 - Xcc-8004.3770.1 0.18 -0.3 3,643,275 - Xcc-8004.3770.1 0.18 -1.5 3,643,551 + Xcc-8004.3770.1 0.53 +0.5 3,643,551 + Xcc-8004.3770.1 0.53 -0.3 3,643,551 + Xcc-8004.3770.1 0.53 -1.1 3,643,551 + Xcc-8004.3770.1 0.53 +0.6 3,643,552 - Xcc-8004.3770.1 0.53 -0.5 3,643,552 - Xcc-8004.3770.1 0.53 -0.1 3,643,552 - Xcc-8004.3770.1 0.53 -0.3 3,643,552 - Xcc-8004.3770.1 0.53 +1.4 3,643,656 + Xcc-8004.3770.1 0.66 -0.1 3,643,656 + Xcc-8004.3770.1 0.66 +0.8 3,643,724 + Xcc-8004.3770.1 0.74 +1.6 3,643,724 + Xcc-8004.3770.1 0.74 +0.1 3,643,724 + Xcc-8004.3770.1 0.74 -0.2 3,643,724 + Xcc-8004.3770.1 0.74 -0.5 3,643,725 - Xcc-8004.3770.1 0.75 +0.2 3,643,858 - -0.3 3,643,858 - -1.1 3,643,858 - +0.5 3,643,858 - -2.0 3,644,084 - Xcc-8004.3771.1 0.15 -0.1 3,644,135 + Xcc-8004.3771.1 0.20 -0.8 3,644,135 + Xcc-8004.3771.1 0.20 +0.5 3,644,135 + Xcc-8004.3771.1 0.20 +0.4 3,644,135 + Xcc-8004.3771.1 0.20 -0.4 3,644,136 - Xcc-8004.3771.1 0.20 +0.0 3,644,136 - Xcc-8004.3771.1 0.20 -0.8 3,644,136 - Xcc-8004.3771.1 0.20 -1.0 3,644,136 - Xcc-8004.3771.1 0.20 -1.2 3,644,978 + +0.9 3,644,978 + -0.7 3,644,979 - +0.1 3,645,147 + Xcc-8004.3772.1 0.16 +1.3 3,645,148 - Xcc-8004.3772.1 0.16 -0.2 3,645,148 - Xcc-8004.3772.1 0.16 +0.0 3,645,148 - Xcc-8004.3772.1 0.16 +0.7 3,645,487 - Xcc-8004.3772.1 0.56 -0.1 3,645,487 - Xcc-8004.3772.1 0.56 +0.7 3,645,487 - Xcc-8004.3772.1 0.56 -1.3 3,645,507 + Xcc-8004.3772.1 0.59 -1.5 3,645,507 + Xcc-8004.3772.1 0.59 +0.3 3,645,507 + Xcc-8004.3772.1 0.59 +0.4 3,645,507 + Xcc-8004.3772.1 0.59 +1.2 3,645,507 + Xcc-8004.3772.1 0.59 -0.7 3,645,508 - Xcc-8004.3772.1 0.59 -0.5 3,645,508 - Xcc-8004.3772.1 0.59 -0.5 3,645,508 - Xcc-8004.3772.1 0.59 +1.5 3,645,508 - Xcc-8004.3772.1 0.59 +0.4 3,645,508 - Xcc-8004.3772.1 0.59 +0.6 3,645,508 - Xcc-8004.3772.1 0.59 +0.3 3,645,508 - Xcc-8004.3772.1 0.59 +0.5 3,645,795 + -0.1 3,645,795 + -0.3 3,645,795 + +1.6 3,645,796 - +0.2 3,645,796 - -0.5 3,645,834 + +0.1 3,645,834 + +1.8 3,645,835 - -1.3 3,645,835 - +1.5 3,645,931 + +0.6 3,645,931 + -0.3 3,645,931 + -0.4 3,645,932 - +0.8 3,645,958 + +0.0 3,645,959 - +0.5
Or see this region's nucleotide sequence