Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.311.1 and Xcc-8004.312.1 are separated by 190 nucleotides Xcc-8004.312.1 and Xcc-8004.314.1 are separated by 3 nucleotides
Xcc-8004.311.1: Xcc-8004.311.1 - Isocitrate lyase (EC 4.1.3.1), at 298,841 to 300,136
Xcc-8004.311.1
Xcc-8004.312.1: Xcc-8004.312.1 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 300,327 to 301,370
Xcc-8004.312.1
Xcc-8004.314.1: Xcc-8004.314.1 - Adenylate cyclase (EC 4.6.1.1), at 301,374 to 304,034
Xcc-8004.314.1
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 299.654 kb on + strand, within Xcc-8004.311.1 at 299.654 kb on + strand, within Xcc-8004.311.1 at 299.655 kb on - strand, within Xcc-8004.311.1 at 299.765 kb on + strand, within Xcc-8004.311.1 at 299.765 kb on + strand, within Xcc-8004.311.1 at 299.765 kb on + strand, within Xcc-8004.311.1 at 299.766 kb on - strand, within Xcc-8004.311.1 at 299.766 kb on - strand, within Xcc-8004.311.1 at 299.766 kb on - strand, within Xcc-8004.311.1 at 299.766 kb on - strand, within Xcc-8004.311.1 at 299.766 kb on - strand, within Xcc-8004.311.1 at 299.767 kb on + strand, within Xcc-8004.311.1 at 299.767 kb on + strand, within Xcc-8004.311.1 at 299.767 kb on + strand, within Xcc-8004.311.1 at 299.768 kb on - strand, within Xcc-8004.311.1 at 299.768 kb on - strand, within Xcc-8004.311.1 at 299.768 kb on - strand, within Xcc-8004.311.1 at 299.768 kb on - strand, within Xcc-8004.311.1 at 299.768 kb on - strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.846 kb on + strand, within Xcc-8004.311.1 at 299.847 kb on - strand, within Xcc-8004.311.1 at 299.847 kb on - strand, within Xcc-8004.311.1 at 299.847 kb on - strand, within Xcc-8004.311.1 at 299.847 kb on - strand, within Xcc-8004.311.1 at 299.847 kb on - strand, within Xcc-8004.311.1 at 299.847 kb on - strand, within Xcc-8004.311.1 at 299.847 kb on - strand, within Xcc-8004.311.1 at 299.852 kb on + strand, within Xcc-8004.311.1 at 299.852 kb on + strand, within Xcc-8004.311.1 at 299.853 kb on - strand, within Xcc-8004.311.1 at 299.853 kb on - strand, within Xcc-8004.311.1 at 299.853 kb on - strand, within Xcc-8004.311.1 at 299.897 kb on + strand, within Xcc-8004.311.1 at 299.897 kb on + strand, within Xcc-8004.311.1 at 299.897 kb on + strand, within Xcc-8004.311.1 at 299.898 kb on - strand, within Xcc-8004.311.1 at 299.898 kb on - strand, within Xcc-8004.311.1 at 299.902 kb on + strand, within Xcc-8004.311.1 at 299.902 kb on + strand, within Xcc-8004.311.1 at 299.902 kb on + strand, within Xcc-8004.311.1 at 299.902 kb on + strand, within Xcc-8004.311.1 at 299.902 kb on + strand, within Xcc-8004.311.1 at 299.902 kb on + strand, within Xcc-8004.311.1 at 299.903 kb on - strand, within Xcc-8004.311.1 at 299.903 kb on - strand, within Xcc-8004.311.1 at 299.903 kb on - strand, within Xcc-8004.311.1 at 299.903 kb on - strand, within Xcc-8004.311.1 at 299.995 kb on + strand, within Xcc-8004.311.1 at 299.996 kb on - strand, within Xcc-8004.311.1 at 299.996 kb on - strand, within Xcc-8004.311.1 at 300.134 kb on + strand at 300.134 kb on + strand at 300.135 kb on - strand at 300.135 kb on - strand at 300.135 kb on - strand at 300.135 kb on - strand at 300.279 kb on + strand at 300.280 kb on - strand at 300.280 kb on - strand at 300.315 kb on + strand at 300.338 kb on + strand at 300.338 kb on + strand at 300.338 kb on + strand at 300.338 kb on + strand at 300.338 kb on + strand at 300.339 kb on - strand at 300.449 kb on + strand, within Xcc-8004.312.1 at 300.450 kb on - strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 301.008 kb on + strand, within Xcc-8004.312.1 at 301.008 kb on + strand, within Xcc-8004.312.1 at 301.009 kb on - strand, within Xcc-8004.312.1 at 301.266 kb on + strand at 301.266 kb on + strand at 301.266 kb on + strand at 301.266 kb on + strand at 301.266 kb on + strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.268 kb on + strand at 301.269 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.280 kb on + strand at 301.303 kb on - strand at 301.303 kb on - strand at 301.341 kb on + strand at 301.342 kb on - strand at 301.342 kb on - strand at 301.368 kb on + strand at 301.368 kb on + strand at 301.435 kb on + strand at 301.436 kb on - strand at 301.436 kb on - strand at 301.968 kb on + strand, within Xcc-8004.314.1 at 301.968 kb on + strand, within Xcc-8004.314.1 at 301.968 kb on + strand, within Xcc-8004.314.1 at 301.969 kb on - strand, within Xcc-8004.314.1 at 301.969 kb on - strand, within Xcc-8004.314.1 at 302.036 kb on + strand, within Xcc-8004.314.1 at 302.080 kb on + strand, within Xcc-8004.314.1 at 302.081 kb on - strand, within Xcc-8004.314.1 at 302.253 kb on + strand, within Xcc-8004.314.1 at 302.360 kb on - strand, within Xcc-8004.314.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 299,654 + Xcc-8004.311.1 0.63 -0.4 299,654 + Xcc-8004.311.1 0.63 -0.7 299,655 - Xcc-8004.311.1 0.63 +0.4 299,765 + Xcc-8004.311.1 0.71 -0.4 299,765 + Xcc-8004.311.1 0.71 -0.7 299,765 + Xcc-8004.311.1 0.71 +1.5 299,766 - Xcc-8004.311.1 0.71 +1.6 299,766 - Xcc-8004.311.1 0.71 -0.5 299,766 - Xcc-8004.311.1 0.71 +0.4 299,766 - Xcc-8004.311.1 0.71 +0.2 299,766 - Xcc-8004.311.1 0.71 +0.3 299,767 + Xcc-8004.311.1 0.71 -1.0 299,767 + Xcc-8004.311.1 0.71 +0.4 299,767 + Xcc-8004.311.1 0.71 -0.5 299,768 - Xcc-8004.311.1 0.72 +0.3 299,768 - Xcc-8004.311.1 0.72 -0.1 299,768 - Xcc-8004.311.1 0.72 -0.4 299,768 - Xcc-8004.311.1 0.72 -0.9 299,768 - Xcc-8004.311.1 0.72 -1.7 299,846 + Xcc-8004.311.1 0.78 -0.3 299,846 + Xcc-8004.311.1 0.78 +0.0 299,846 + Xcc-8004.311.1 0.78 -0.1 299,846 + Xcc-8004.311.1 0.78 -0.4 299,846 + Xcc-8004.311.1 0.78 -0.6 299,846 + Xcc-8004.311.1 0.78 +0.3 299,846 + Xcc-8004.311.1 0.78 -0.7 299,846 + Xcc-8004.311.1 0.78 -3.0 299,846 + Xcc-8004.311.1 0.78 -0.2 299,846 + Xcc-8004.311.1 0.78 -2.2 299,846 + Xcc-8004.311.1 0.78 +0.3 299,847 - Xcc-8004.311.1 0.78 +0.4 299,847 - Xcc-8004.311.1 0.78 -0.5 299,847 - Xcc-8004.311.1 0.78 -1.0 299,847 - Xcc-8004.311.1 0.78 -0.7 299,847 - Xcc-8004.311.1 0.78 +0.5 299,847 - Xcc-8004.311.1 0.78 -1.0 299,847 - Xcc-8004.311.1 0.78 +0.6 299,852 + Xcc-8004.311.1 0.78 +0.2 299,852 + Xcc-8004.311.1 0.78 -0.2 299,853 - Xcc-8004.311.1 0.78 +0.3 299,853 - Xcc-8004.311.1 0.78 -0.3 299,853 - Xcc-8004.311.1 0.78 -0.5 299,897 + Xcc-8004.311.1 0.81 +0.8 299,897 + Xcc-8004.311.1 0.81 -0.5 299,897 + Xcc-8004.311.1 0.81 -0.2 299,898 - Xcc-8004.311.1 0.82 +1.2 299,898 - Xcc-8004.311.1 0.82 +0.5 299,902 + Xcc-8004.311.1 0.82 -0.5 299,902 + Xcc-8004.311.1 0.82 -0.3 299,902 + Xcc-8004.311.1 0.82 +0.5 299,902 + Xcc-8004.311.1 0.82 -0.3 299,902 + Xcc-8004.311.1 0.82 +0.3 299,902 + Xcc-8004.311.1 0.82 -0.6 299,903 - Xcc-8004.311.1 0.82 -0.5 299,903 - Xcc-8004.311.1 0.82 +1.6 299,903 - Xcc-8004.311.1 0.82 +0.5 299,903 - Xcc-8004.311.1 0.82 +0.3 299,995 + Xcc-8004.311.1 0.89 -0.7 299,996 - Xcc-8004.311.1 0.89 +0.4 299,996 - Xcc-8004.311.1 0.89 -0.2 300,134 + -0.4 300,134 + -0.0 300,135 - -0.2 300,135 - -0.7 300,135 - +0.8 300,135 - +0.1 300,279 + +0.2 300,280 - -0.7 300,280 - -0.2 300,315 + +0.1 300,338 + -1.0 300,338 + +0.3 300,338 + -1.6 300,338 + +1.6 300,338 + -1.7 300,339 - +0.1 300,449 + Xcc-8004.312.1 0.12 -1.5 300,450 - Xcc-8004.312.1 0.12 +0.3 300,828 + Xcc-8004.312.1 0.48 -0.2 300,828 + Xcc-8004.312.1 0.48 -1.0 300,828 + Xcc-8004.312.1 0.48 -0.3 300,828 + Xcc-8004.312.1 0.48 -1.3 300,828 + Xcc-8004.312.1 0.48 -0.3 300,829 - Xcc-8004.312.1 0.48 -0.9 300,829 - Xcc-8004.312.1 0.48 -0.8 300,829 - Xcc-8004.312.1 0.48 -1.9 300,829 - Xcc-8004.312.1 0.48 -0.6 301,008 + Xcc-8004.312.1 0.65 -0.8 301,008 + Xcc-8004.312.1 0.65 -0.6 301,009 - Xcc-8004.312.1 0.65 -0.7 301,266 + -1.6 301,266 + +0.6 301,266 + +0.7 301,266 + -0.7 301,266 + +0.1 301,267 - +0.1 301,267 - -1.2 301,267 - +0.3 301,267 - +1.1 301,267 - +0.1 301,268 + +0.8 301,269 - +1.1 301,279 - -0.1 301,279 - -0.6 301,279 - +0.2 301,279 - -0.0 301,279 - -1.7 301,280 + +0.2 301,303 - -1.0 301,303 - -0.2 301,341 + +2.3 301,342 - -1.6 301,342 - -0.2 301,368 + -0.7 301,368 + -1.0 301,435 + +0.1 301,436 - -1.1 301,436 - -2.3 301,968 + Xcc-8004.314.1 0.22 -1.7 301,968 + Xcc-8004.314.1 0.22 -0.1 301,968 + Xcc-8004.314.1 0.22 -1.0 301,969 - Xcc-8004.314.1 0.22 +2.6 301,969 - Xcc-8004.314.1 0.22 +0.3 302,036 + Xcc-8004.314.1 0.25 -0.2 302,080 + Xcc-8004.314.1 0.27 -0.7 302,081 - Xcc-8004.314.1 0.27 +0.3 302,253 + Xcc-8004.314.1 0.33 +0.4 302,360 - Xcc-8004.314.1 0.37 +0.4
Or see this region's nucleotide sequence