Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2212.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2211.1 and Xcc-8004.2212.1 overlap by 4 nucleotidesXcc-8004.2212.1 and Xcc-8004.2213.1 are separated by 156 nucleotidesXcc-8004.2213.1 and Xcc-8004.2214.1 are separated by 263 nucleotides Xcc-8004.2211.1: Xcc-8004.2211.1 - Putrescine transport system permease protein PotH (TC 3.A.1.11.2), at 2,162,209 to 2,163,267 Xcc-8004.2211.1 Xcc-8004.2212.1: Xcc-8004.2212.1 - Putrescine transport system permease protein PotI (TC 3.A.1.11.2), at 2,163,264 to 2,164,112 Xcc-8004.2212.1 Xcc-8004.2213.1: Xcc-8004.2213.1 - FIG01210598: hypothetical protein, at 2,164,269 to 2,164,679 Xcc-8004.2213.1 Xcc-8004.2214.1: Xcc-8004.2214.1 - Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 2,164,943 to 2,166,307 Xcc-8004.2214.1 Position (kb) 2163 2164 2165Strain fitness (log2 ratio) -2 -1 0 1 2at 2162.292 kb on + strandat 2162.292 kb on + strandat 2162.293 kb on - strandat 2162.293 kb on - strandat 2162.293 kb on - strandat 2162.293 kb on - strandat 2162.293 kb on - strandat 2162.293 kb on - strandat 2162.293 kb on - strandat 2162.293 kb on - strandat 2162.301 kb on + strandat 2162.301 kb on + strandat 2162.301 kb on + strandat 2162.301 kb on + strandat 2162.301 kb on + strandat 2162.302 kb on - strandat 2162.302 kb on - strandat 2162.302 kb on - strandat 2162.350 kb on + strand, within Xcc-8004.2211.1at 2162.350 kb on + strand, within Xcc-8004.2211.1at 2162.351 kb on - strand, within Xcc-8004.2211.1at 2162.360 kb on + strand, within Xcc-8004.2211.1at 2162.370 kb on + strand, within Xcc-8004.2211.1at 2162.416 kb on + strand, within Xcc-8004.2211.1at 2162.417 kb on - strand, within Xcc-8004.2211.1at 2162.417 kb on - strand, within Xcc-8004.2211.1at 2162.417 kb on - strand, within Xcc-8004.2211.1at 2162.417 kb on - strand, within Xcc-8004.2211.1at 2162.417 kb on - strand, within Xcc-8004.2211.1at 2162.417 kb on - strand, within Xcc-8004.2211.1at 2162.504 kb on - strand, within Xcc-8004.2211.1at 2162.566 kb on + strand, within Xcc-8004.2211.1at 2162.566 kb on + strand, within Xcc-8004.2211.1at 2162.566 kb on + strand, within Xcc-8004.2211.1at 2162.566 kb on + strand, within Xcc-8004.2211.1at 2162.567 kb on - strand, within Xcc-8004.2211.1at 2162.567 kb on - strand, within Xcc-8004.2211.1at 2162.567 kb on - strand, within Xcc-8004.2211.1at 2162.567 kb on - strand, within Xcc-8004.2211.1at 2162.567 kb on - strand, within Xcc-8004.2211.1at 2162.593 kb on + strand, within Xcc-8004.2211.1at 2162.593 kb on + strand, within Xcc-8004.2211.1at 2162.593 kb on + strand, within Xcc-8004.2211.1at 2162.593 kb on + strand, within Xcc-8004.2211.1at 2162.593 kb on + strand, within Xcc-8004.2211.1at 2162.674 kb on + strand, within Xcc-8004.2211.1at 2162.674 kb on + strand, within Xcc-8004.2211.1at 2162.674 kb on + strand, within Xcc-8004.2211.1at 2162.674 kb on + strand, within Xcc-8004.2211.1at 2162.675 kb on - strand, within Xcc-8004.2211.1at 2162.675 kb on - strand, within Xcc-8004.2211.1at 2162.675 kb on - strand, within Xcc-8004.2211.1at 2162.675 kb on - strand, within Xcc-8004.2211.1at 2162.675 kb on - strand, within Xcc-8004.2211.1at 2162.762 kb on + strand, within Xcc-8004.2211.1at 2162.762 kb on + strand, within Xcc-8004.2211.1at 2162.762 kb on + strand, within Xcc-8004.2211.1at 2162.763 kb on - strand, within Xcc-8004.2211.1at 2162.763 kb on - strand, within Xcc-8004.2211.1at 2162.763 kb on - strand, within Xcc-8004.2211.1at 2162.763 kb on - strand, within Xcc-8004.2211.1at 2162.763 kb on - strand, within Xcc-8004.2211.1at 2162.765 kb on - strand, within Xcc-8004.2211.1at 2162.854 kb on + strand, within Xcc-8004.2211.1at 2162.854 kb on + strand, within Xcc-8004.2211.1at 2162.855 kb on - strand, within Xcc-8004.2211.1at 2162.872 kb on + strand, within Xcc-8004.2211.1at 2162.872 kb on + strand, within Xcc-8004.2211.1at 2162.887 kb on + strand, within Xcc-8004.2211.1at 2162.887 kb on + strand, within Xcc-8004.2211.1at 2162.887 kb on + strand, within Xcc-8004.2211.1at 2162.888 kb on - strand, within Xcc-8004.2211.1at 2162.888 kb on - strand, within Xcc-8004.2211.1at 2162.888 kb on - strand, within Xcc-8004.2211.1at 2162.888 kb on - strand, within Xcc-8004.2211.1at 2162.893 kb on + strand, within Xcc-8004.2211.1at 2162.893 kb on + strand, within Xcc-8004.2211.1at 2162.894 kb on - strand, within Xcc-8004.2211.1at 2162.894 kb on - strand, within Xcc-8004.2211.1at 2162.894 kb on - strand, within Xcc-8004.2211.1at 2162.921 kb on - strand, within Xcc-8004.2211.1at 2162.965 kb on + strand, within Xcc-8004.2211.1at 2162.965 kb on + strand, within Xcc-8004.2211.1at 2162.966 kb on - strand, within Xcc-8004.2211.1at 2162.966 kb on - strand, within Xcc-8004.2211.1at 2163.334 kb on - strandat 2163.334 kb on - strandat 2163.360 kb on + strand, within Xcc-8004.2212.1at 2163.360 kb on + strand, within Xcc-8004.2212.1at 2163.360 kb on + strand, within Xcc-8004.2212.1at 2163.360 kb on + strand, within Xcc-8004.2212.1at 2163.360 kb on + strand, within Xcc-8004.2212.1at 2163.361 kb on - strand, within Xcc-8004.2212.1at 2163.361 kb on - strand, within Xcc-8004.2212.1at 2163.417 kb on + strand, within Xcc-8004.2212.1at 2164.164 kb on + strandat 2164.164 kb on + strandat 2164.165 kb on - strandat 2164.177 kb on + strandat 2164.178 kb on - strandat 2164.289 kb on - strandat 2164.321 kb on + strand, within Xcc-8004.2213.1at 2164.322 kb on - strand, within Xcc-8004.2213.1at 2164.545 kb on + strand, within Xcc-8004.2213.1at 2164.545 kb on + strand, within Xcc-8004.2213.1at 2164.650 kb on + strandat 2164.650 kb on + strandat 2164.651 kb on - strandat 2164.651 kb on - strandat 2164.725 kb on + strandat 2164.725 kb on + strandat 2164.725 kb on + strandat 2164.726 kb on - strandat 2164.761 kb on - strandat 2164.912 kb on + strandat 2164.912 kb on + strandat 2164.928 kb on + strandat 2164.928 kb on + strandat 2164.928 kb on + strandat 2164.949 kb on + strandat 2164.949 kb on + strandat 2164.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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2,162,292 + +0.2
2,162,292 + -0.4
2,162,293 - +0.3
2,162,293 - +0.4
2,162,293 - -0.8
2,162,293 - +0.0
2,162,293 - -0.8
2,162,293 - +0.2
2,162,293 - -0.4
2,162,293 - -0.6
2,162,301 + -2.1
2,162,301 + -0.6
2,162,301 + -0.6
2,162,301 + +0.4
2,162,301 + -0.2
2,162,302 - -0.4
2,162,302 - -1.1
2,162,302 - -0.6
2,162,350 + Xcc-8004.2211.1 0.13 +0.2
2,162,350 + Xcc-8004.2211.1 0.13 +0.4
2,162,351 - Xcc-8004.2211.1 0.13 -0.8
2,162,360 + Xcc-8004.2211.1 0.14 +0.0
2,162,370 + Xcc-8004.2211.1 0.15 +0.2
2,162,416 + Xcc-8004.2211.1 0.20 -0.7
2,162,417 - Xcc-8004.2211.1 0.20 -0.2
2,162,417 - Xcc-8004.2211.1 0.20 -0.6
2,162,417 - Xcc-8004.2211.1 0.20 +0.0
2,162,417 - Xcc-8004.2211.1 0.20 +1.8
2,162,417 - Xcc-8004.2211.1 0.20 +0.0
2,162,417 - Xcc-8004.2211.1 0.20 -0.3
2,162,504 - Xcc-8004.2211.1 0.28 +0.7
2,162,566 + Xcc-8004.2211.1 0.34 +1.2
2,162,566 + Xcc-8004.2211.1 0.34 -1.6
2,162,566 + Xcc-8004.2211.1 0.34 +0.9
2,162,566 + Xcc-8004.2211.1 0.34 +1.2
2,162,567 - Xcc-8004.2211.1 0.34 +0.1
2,162,567 - Xcc-8004.2211.1 0.34 -0.7
2,162,567 - Xcc-8004.2211.1 0.34 +2.0
2,162,567 - Xcc-8004.2211.1 0.34 -1.1
2,162,567 - Xcc-8004.2211.1 0.34 -0.3
2,162,593 + Xcc-8004.2211.1 0.36 -0.1
2,162,593 + Xcc-8004.2211.1 0.36 +1.0
2,162,593 + Xcc-8004.2211.1 0.36 -1.4
2,162,593 + Xcc-8004.2211.1 0.36 +0.2
2,162,593 + Xcc-8004.2211.1 0.36 -0.7
2,162,674 + Xcc-8004.2211.1 0.44 -0.6
2,162,674 + Xcc-8004.2211.1 0.44 +0.3
2,162,674 + Xcc-8004.2211.1 0.44 +0.0
2,162,674 + Xcc-8004.2211.1 0.44 +0.7
2,162,675 - Xcc-8004.2211.1 0.44 -0.1
2,162,675 - Xcc-8004.2211.1 0.44 +0.4
2,162,675 - Xcc-8004.2211.1 0.44 -0.5
2,162,675 - Xcc-8004.2211.1 0.44 -1.0
2,162,675 - Xcc-8004.2211.1 0.44 -0.1
2,162,762 + Xcc-8004.2211.1 0.52 -1.0
2,162,762 + Xcc-8004.2211.1 0.52 +0.4
2,162,762 + Xcc-8004.2211.1 0.52 -0.2
2,162,763 - Xcc-8004.2211.1 0.52 +0.3
2,162,763 - Xcc-8004.2211.1 0.52 +1.8
2,162,763 - Xcc-8004.2211.1 0.52 -0.5
2,162,763 - Xcc-8004.2211.1 0.52 -0.3
2,162,763 - Xcc-8004.2211.1 0.52 +0.5
2,162,765 - Xcc-8004.2211.1 0.53 +1.2
2,162,854 + Xcc-8004.2211.1 0.61 +0.3
2,162,854 + Xcc-8004.2211.1 0.61 -1.0
2,162,855 - Xcc-8004.2211.1 0.61 -0.5
2,162,872 + Xcc-8004.2211.1 0.63 +2.2
2,162,872 + Xcc-8004.2211.1 0.63 -0.6
2,162,887 + Xcc-8004.2211.1 0.64 +0.8
2,162,887 + Xcc-8004.2211.1 0.64 +0.7
2,162,887 + Xcc-8004.2211.1 0.64 -0.4
2,162,888 - Xcc-8004.2211.1 0.64 +1.0
2,162,888 - Xcc-8004.2211.1 0.64 -0.6
2,162,888 - Xcc-8004.2211.1 0.64 -0.6
2,162,888 - Xcc-8004.2211.1 0.64 +2.0
2,162,893 + Xcc-8004.2211.1 0.65 +0.8
2,162,893 + Xcc-8004.2211.1 0.65 -1.1
2,162,894 - Xcc-8004.2211.1 0.65 +0.3
2,162,894 - Xcc-8004.2211.1 0.65 -0.9
2,162,894 - Xcc-8004.2211.1 0.65 +0.0
2,162,921 - Xcc-8004.2211.1 0.67 +1.5
2,162,965 + Xcc-8004.2211.1 0.71 +0.4
2,162,965 + Xcc-8004.2211.1 0.71 +1.2
2,162,966 - Xcc-8004.2211.1 0.71 +0.7
2,162,966 - Xcc-8004.2211.1 0.71 -0.1
2,163,334 - -0.9
2,163,334 - +0.0
2,163,360 + Xcc-8004.2212.1 0.11 -1.0
2,163,360 + Xcc-8004.2212.1 0.11 -0.1
2,163,360 + Xcc-8004.2212.1 0.11 -0.3
2,163,360 + Xcc-8004.2212.1 0.11 -0.7
2,163,360 + Xcc-8004.2212.1 0.11 +0.0
2,163,361 - Xcc-8004.2212.1 0.11 -1.0
2,163,361 - Xcc-8004.2212.1 0.11 +0.2
2,163,417 + Xcc-8004.2212.1 0.18 -1.6
2,164,164 + -0.8
2,164,164 + -0.7
2,164,165 - +0.6
2,164,177 + +0.6
2,164,178 - +0.1
2,164,289 - -2.1
2,164,321 + Xcc-8004.2213.1 0.13 +0.1
2,164,322 - Xcc-8004.2213.1 0.13 -1.0
2,164,545 + Xcc-8004.2213.1 0.67 +0.0
2,164,545 + Xcc-8004.2213.1 0.67 +0.0
2,164,650 + -0.4
2,164,650 + +0.7
2,164,651 - -0.3
2,164,651 - +0.1
2,164,725 + -1.1
2,164,725 + +0.3
2,164,725 + -0.1
2,164,726 - +0.2
2,164,761 - +1.0
2,164,912 + +1.2
2,164,912 + -1.0
2,164,928 + +1.6
2,164,928 + -0.3
2,164,928 + -0.6
2,164,949 + -1.5
2,164,949 + +0.6
2,164,988 - +0.9

Or see this region's nucleotide sequence