Strain Fitness in Sinorhizobium meliloti 1021 around SMc04310

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04309 and SMc04310 are separated by 244 nucleotidesSMc04310 and SMc04311 are separated by 463 nucleotides SMc04309: SMc04309 - cobyric acid synthase, at 2,127,274 to 2,128,728 SMc04309 SMc04310: SMc04310 - hypothetical protein, at 2,128,973 to 2,129,116 SMc04310 SMc04311: SMc04311 - hypothetical protein, at 2,129,580 to 2,130,578 SMc04311 Position (kb) 2128 2129 2130Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2128.915 kb on + strandat 2128.917 kb on + strandat 2128.965 kb on - strandat 2129.114 kb on + strandat 2129.232 kb on - strandat 2129.232 kb on - strandat 2129.262 kb on + strandat 2129.263 kb on - strandat 2129.307 kb on + strandat 2129.307 kb on + strandat 2129.307 kb on + strandat 2129.322 kb on - strandat 2129.387 kb on + strandat 2129.412 kb on - strandat 2129.466 kb on + strandat 2129.597 kb on + strandat 2129.620 kb on + strandat 2129.620 kb on + strandat 2129.620 kb on + strandat 2129.620 kb on + strandat 2129.620 kb on + strandat 2129.620 kb on + strandat 2129.620 kb on + strandat 2129.620 kb on + strandat 2129.620 kb on + strandat 2129.621 kb on - strandat 2129.621 kb on - strandat 2129.621 kb on - strandat 2129.621 kb on - strandat 2130.045 kb on - strand, within SMc04311at 2130.090 kb on + strand, within SMc04311at 2130.090 kb on + strand, within SMc04311at 2130.091 kb on - strand, within SMc04311at 2130.091 kb on - strand, within SMc04311

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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2,128,915 + -0.5
2,128,917 + -2.5
2,128,965 - +0.1
2,129,114 + -1.2
2,129,232 - -0.4
2,129,232 - -0.9
2,129,262 + +2.7
2,129,263 - +0.7
2,129,307 + +0.0
2,129,307 + +0.2
2,129,307 + -0.3
2,129,322 - -0.3
2,129,387 + +4.2
2,129,412 - -0.4
2,129,466 + +1.3
2,129,597 + -0.2
2,129,620 + +0.1
2,129,620 + +3.5
2,129,620 + -1.1
2,129,620 + +0.4
2,129,620 + +0.3
2,129,620 + -1.4
2,129,620 + -0.8
2,129,620 + +0.4
2,129,620 + -0.6
2,129,621 - +0.1
2,129,621 - -1.0
2,129,621 - -0.9
2,129,621 - +0.0
2,130,045 - SMc04311 0.47 +3.3
2,130,090 + SMc04311 0.51 +0.6
2,130,090 + SMc04311 0.51 -0.0
2,130,091 - SMc04311 0.51 -1.5
2,130,091 - SMc04311 0.51 -1.6

Or see this region's nucleotide sequence