Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04120 and SMc04119 overlap by 4 nucleotides SMc04119 and SMc04118 are separated by 220 nucleotides SMc04118 and SMc04117 are separated by 7 nucleotides
SMc04120: SMc04120 - adenosine deaminase, at 154,871 to 155,845
SMc04120
SMc04119: SMc04119 - phosphopentomutase, at 155,842 to 157,062
SMc04119
SMc04118: SMc04118 - hypothetical protein, at 157,283 to 157,867
SMc04118
SMc04117: SMc04117 - hypothetical protein, at 157,875 to 158,489
SMc04117
Position (kb) 155
156
157
158 Strain fitness (log2 ratio) -2
-1
0
1 at 154.873 kb on - strand at 154.880 kb on + strand at 154.880 kb on + strand at 154.881 kb on - strand at 154.999 kb on - strand, within SMc04120 at 155.409 kb on + strand, within SMc04120 at 155.528 kb on - strand, within SMc04120 at 155.529 kb on + strand, within SMc04120 at 155.529 kb on + strand, within SMc04120 at 155.590 kb on - strand, within SMc04120 at 155.596 kb on + strand, within SMc04120 at 155.622 kb on + strand, within SMc04120 at 155.622 kb on + strand, within SMc04120 at 155.623 kb on - strand, within SMc04120 at 155.643 kb on + strand, within SMc04120 at 155.682 kb on + strand, within SMc04120 at 155.718 kb on + strand, within SMc04120 at 155.719 kb on - strand, within SMc04120 at 155.719 kb on - strand, within SMc04120 at 156.141 kb on - strand, within SMc04119 at 156.141 kb on - strand, within SMc04119 at 156.279 kb on + strand, within SMc04119 at 156.551 kb on + strand, within SMc04119 at 156.551 kb on + strand, within SMc04119 at 156.552 kb on - strand, within SMc04119 at 156.552 kb on - strand, within SMc04119 at 156.552 kb on - strand, within SMc04119 at 156.552 kb on - strand, within SMc04119 at 156.552 kb on - strand, within SMc04119 at 156.576 kb on + strand, within SMc04119 at 156.576 kb on + strand, within SMc04119 at 156.576 kb on + strand, within SMc04119 at 156.577 kb on - strand, within SMc04119 at 156.577 kb on - strand, within SMc04119 at 156.577 kb on - strand, within SMc04119 at 156.710 kb on + strand, within SMc04119 at 156.800 kb on + strand, within SMc04119 at 156.810 kb on - strand, within SMc04119 at 156.810 kb on - strand, within SMc04119 at 157.118 kb on + strand at 157.118 kb on + strand at 157.235 kb on - strand at 157.235 kb on - strand at 157.329 kb on + strand at 157.329 kb on + strand at 157.329 kb on + strand at 157.330 kb on - strand at 157.575 kb on + strand, within SMc04118 at 157.591 kb on - strand, within SMc04118 at 157.746 kb on + strand, within SMc04118 at 157.747 kb on - strand, within SMc04118 at 157.747 kb on - strand, within SMc04118 at 157.747 kb on - strand, within SMc04118 at 157.879 kb on + strand at 157.880 kb on - strand at 157.918 kb on + strand at 157.919 kb on - strand at 157.999 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.010 kb on + strand, within SMc04117 at 158.020 kb on + strand, within SMc04117
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 154,873 - -0.2 154,880 + -1.0 154,880 + -0.5 154,881 - -0.3 154,999 - SMc04120 0.13 +0.5 155,409 + SMc04120 0.55 -1.0 155,528 - SMc04120 0.67 +0.0 155,529 + SMc04120 0.67 +0.2 155,529 + SMc04120 0.67 -2.5 155,590 - SMc04120 0.74 -0.4 155,596 + SMc04120 0.74 -0.6 155,622 + SMc04120 0.77 -1.3 155,622 + SMc04120 0.77 +0.1 155,623 - SMc04120 0.77 -0.6 155,643 + SMc04120 0.79 +1.0 155,682 + SMc04120 0.83 -0.0 155,718 + SMc04120 0.87 -0.7 155,719 - SMc04120 0.87 +0.4 155,719 - SMc04120 0.87 -1.8 156,141 - SMc04119 0.24 -1.0 156,141 - SMc04119 0.24 +1.6 156,279 + SMc04119 0.36 +0.6 156,551 + SMc04119 0.58 -2.0 156,551 + SMc04119 0.58 -0.2 156,552 - SMc04119 0.58 -0.1 156,552 - SMc04119 0.58 -0.3 156,552 - SMc04119 0.58 -0.6 156,552 - SMc04119 0.58 +1.0 156,552 - SMc04119 0.58 -0.3 156,576 + SMc04119 0.60 -1.4 156,576 + SMc04119 0.60 -1.1 156,576 + SMc04119 0.60 +1.3 156,577 - SMc04119 0.60 +0.3 156,577 - SMc04119 0.60 -1.9 156,577 - SMc04119 0.60 -2.6 156,710 + SMc04119 0.71 +1.0 156,800 + SMc04119 0.78 +0.2 156,810 - SMc04119 0.79 -0.1 156,810 - SMc04119 0.79 +1.3 157,118 + -2.7 157,118 + +0.8 157,235 - +0.8 157,235 - -1.9 157,329 + -1.9 157,329 + -0.0 157,329 + +1.0 157,330 - -0.9 157,575 + SMc04118 0.50 -2.0 157,591 - SMc04118 0.53 +0.4 157,746 + SMc04118 0.79 +0.4 157,747 - SMc04118 0.79 +1.0 157,747 - SMc04118 0.79 -0.7 157,747 - SMc04118 0.79 -1.1 157,879 + +1.0 157,880 - -1.6 157,918 + -0.0 157,919 - -0.3 157,999 + SMc04117 0.20 -0.6 158,002 + SMc04117 0.21 +0.4 158,002 + SMc04117 0.21 -0.4 158,002 + SMc04117 0.21 -2.0 158,002 + SMc04117 0.21 -0.4 158,010 + SMc04117 0.22 -2.6 158,020 + SMc04117 0.24 -0.2
Or see this region's nucleotide sequence