Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03860 and SMc03861 are separated by 10 nucleotides SMc03861 and SMc03862 overlap by 19 nucleotides SMc03862 and SMc03863 are separated by 332 nucleotides SMc03863 and SMc03864 are separated by 126 nucleotides
SMc03860: SMc03860 - 16S rRNA-processing protein RimM, at 3,524,904 to 3,525,467
SMc03860
SMc03861: SMc03861 - tRNA (guanine-N(1)-)-methyltransferase, at 3,525,478 to 3,526,200
SMc03861
SMc03862: SMc03862 - hypothetical protein, at 3,526,182 to 3,526,928
SMc03862
SMc03863: SMc03863 - 50S ribosomal protein L19, at 3,527,261 to 3,527,794
SMc03863
SMc03864: SMc03864 - amino acid-binding periplasmic (signal peptide) ABC transporter protein, at 3,527,921 to 3,528,730
SMc03864
Position (kb)
3526
3527 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3526.199 kb on - strand at 3526.202 kb on - strand at 3526.283 kb on + strand, within SMc03862 at 3526.283 kb on + strand, within SMc03862 at 3526.284 kb on - strand, within SMc03862 at 3526.284 kb on - strand, within SMc03862 at 3526.285 kb on + strand at 3526.285 kb on + strand, within SMc03862 at 3526.493 kb on - strand, within SMc03862 at 3526.760 kb on + strand, within SMc03862 at 3526.761 kb on - strand, within SMc03862 at 3526.763 kb on - strand at 3526.763 kb on - strand, within SMc03862 at 3526.992 kb on - strand at 3526.992 kb on - strand at 3527.568 kb on - strand, within SMc03863 at 3527.605 kb on - strand, within SMc03863 at 3527.875 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 3,526,199 - +0.1 3,526,202 - +0.5 3,526,283 + SMc03862 0.14 -0.9 3,526,283 + SMc03862 0.14 -0.1 3,526,284 - SMc03862 0.14 -3.0 3,526,284 - SMc03862 0.14 +0.9 3,526,285 + +0.9 3,526,285 + SMc03862 0.14 -0.7 3,526,493 - SMc03862 0.42 -1.9 3,526,760 + SMc03862 0.77 -1.8 3,526,761 - SMc03862 0.78 -0.0 3,526,763 - +1.3 3,526,763 - SMc03862 0.78 +0.9 3,526,992 - +0.1 3,526,992 - -0.4 3,527,568 - SMc03863 0.57 +1.1 3,527,605 - SMc03863 0.64 +2.0 3,527,875 + +0.8
Or see this region's nucleotide sequence