Strain Fitness in Sinorhizobium meliloti 1021 around SMc03156

Experiment: Aluminum chloride

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03154 and SMc03155 overlap by 4 nucleotidesSMc03155 and SMc03156 are separated by 78 nucleotidesSMc03156 and SMc03157 are separated by 139 nucleotidesSMc03157 and SMc03158 are separated by 38 nucleotides SMc03154: SMc03154 - hypothetical protein, at 3,112,206 to 3,112,679 SMc03154 SMc03155: SMc03155 - hypothetical protein, at 3,112,676 to 3,113,578 SMc03155 SMc03156: SMc03156 - hypothetical protein, at 3,113,657 to 3,114,604 SMc03156 SMc03157: SMc03157 - outer membrane lipoprotein transmembrane, at 3,114,744 to 3,115,520 SMc03157 SMc03158: SMc03158 - ABC transporter permease, at 3,115,559 to 3,116,224 SMc03158 Position (kb) 3113 3114 3115Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3112.708 kb on + strandat 3112.709 kb on - strandat 3112.709 kb on - strandat 3112.709 kb on - strandat 3113.276 kb on + strand, within SMc03155at 3113.576 kb on + strandat 3113.576 kb on + strandat 3113.577 kb on - strandat 3113.585 kb on + strandat 3113.585 kb on + strandat 3113.586 kb on - strandat 3113.586 kb on - strandat 3113.643 kb on + strandat 3113.733 kb on + strandat 3114.029 kb on + strand, within SMc03156at 3114.029 kb on + strand, within SMc03156at 3114.030 kb on - strand, within SMc03156at 3114.030 kb on - strand, within SMc03156at 3114.101 kb on + strand, within SMc03156at 3114.221 kb on + strand, within SMc03156at 3114.221 kb on + strand, within SMc03156at 3114.221 kb on + strand, within SMc03156at 3114.222 kb on - strand, within SMc03156at 3114.222 kb on - strand, within SMc03156at 3114.222 kb on - strand, within SMc03156at 3114.222 kb on - strand, within SMc03156at 3114.290 kb on + strand, within SMc03156at 3114.291 kb on - strand, within SMc03156at 3114.291 kb on - strand, within SMc03156at 3114.318 kb on - strand, within SMc03156at 3114.318 kb on - strand, within SMc03156at 3114.331 kb on - strand, within SMc03156at 3114.602 kb on + strandat 3114.603 kb on - strandat 3114.704 kb on - strandat 3114.715 kb on + strandat 3114.811 kb on + strandat 3115.190 kb on + strand, within SMc03157at 3115.190 kb on + strand, within SMc03157at 3115.191 kb on - strand, within SMc03157at 3115.191 kb on - strand, within SMc03157at 3115.205 kb on - strand, within SMc03157at 3115.348 kb on + strand, within SMc03157at 3115.348 kb on + strand, within SMc03157at 3115.349 kb on - strand, within SMc03157at 3115.349 kb on - strand, within SMc03157at 3115.369 kb on + strand, within SMc03157at 3115.371 kb on + strand, within SMc03157at 3115.371 kb on + strand, within SMc03157at 3115.371 kb on + strand, within SMc03157at 3115.372 kb on - strand, within SMc03157at 3115.372 kb on - strand, within SMc03157at 3115.372 kb on - strand, within SMc03157

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
remove
3,112,708 + -0.1
3,112,709 - +1.1
3,112,709 - +0.3
3,112,709 - -0.6
3,113,276 + SMc03155 0.66 +0.9
3,113,576 + -0.0
3,113,576 + -3.5
3,113,577 - +1.9
3,113,585 + +0.5
3,113,585 + -0.7
3,113,586 - +1.7
3,113,586 - -1.6
3,113,643 + +0.9
3,113,733 + -0.6
3,114,029 + SMc03156 0.39 +3.5
3,114,029 + SMc03156 0.39 +0.2
3,114,030 - SMc03156 0.39 +1.0
3,114,030 - SMc03156 0.39 +0.2
3,114,101 + SMc03156 0.47 +1.3
3,114,221 + SMc03156 0.59 +0.7
3,114,221 + SMc03156 0.59 -0.1
3,114,221 + SMc03156 0.59 +0.3
3,114,222 - SMc03156 0.60 -0.0
3,114,222 - SMc03156 0.60 -0.3
3,114,222 - SMc03156 0.60 +1.2
3,114,222 - SMc03156 0.60 +1.2
3,114,290 + SMc03156 0.67 +1.5
3,114,291 - SMc03156 0.67 +0.9
3,114,291 - SMc03156 0.67 -0.2
3,114,318 - SMc03156 0.70 +2.9
3,114,318 - SMc03156 0.70 +0.9
3,114,331 - SMc03156 0.71 -1.0
3,114,602 + +0.6
3,114,603 - +0.1
3,114,704 - +1.2
3,114,715 + -0.8
3,114,811 + +1.6
3,115,190 + SMc03157 0.57 +0.3
3,115,190 + SMc03157 0.57 +1.1
3,115,191 - SMc03157 0.58 -0.3
3,115,191 - SMc03157 0.58 +0.7
3,115,205 - SMc03157 0.59 +1.1
3,115,348 + SMc03157 0.78 +0.2
3,115,348 + SMc03157 0.78 -0.7
3,115,349 - SMc03157 0.78 +0.2
3,115,349 - SMc03157 0.78 -1.6
3,115,369 + SMc03157 0.80 -0.6
3,115,371 + SMc03157 0.81 -0.4
3,115,371 + SMc03157 0.81 -1.2
3,115,371 + SMc03157 0.81 +0.7
3,115,372 - SMc03157 0.81 +0.1
3,115,372 - SMc03157 0.81 +0.7
3,115,372 - SMc03157 0.81 +1.2

Or see this region's nucleotide sequence