Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03154 and SMc03155 overlap by 4 nucleotides SMc03155 and SMc03156 are separated by 78 nucleotides SMc03156 and SMc03157 are separated by 139 nucleotides SMc03157 and SMc03158 are separated by 38 nucleotides
SMc03154: SMc03154 - hypothetical protein, at 3,112,206 to 3,112,679
SMc03154
SMc03155: SMc03155 - hypothetical protein, at 3,112,676 to 3,113,578
SMc03155
SMc03156: SMc03156 - hypothetical protein, at 3,113,657 to 3,114,604
SMc03156
SMc03157: SMc03157 - outer membrane lipoprotein transmembrane, at 3,114,744 to 3,115,520
SMc03157
SMc03158: SMc03158 - ABC transporter permease, at 3,115,559 to 3,116,224
SMc03158
Position (kb)
3113
3114
3115 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3112.708 kb on + strand at 3112.709 kb on - strand at 3112.709 kb on - strand at 3112.709 kb on - strand at 3113.276 kb on + strand, within SMc03155 at 3113.576 kb on + strand at 3113.576 kb on + strand at 3113.577 kb on - strand at 3113.585 kb on + strand at 3113.585 kb on + strand at 3113.586 kb on - strand at 3113.586 kb on - strand at 3113.643 kb on + strand at 3113.733 kb on + strand at 3114.029 kb on + strand, within SMc03156 at 3114.029 kb on + strand, within SMc03156 at 3114.030 kb on - strand, within SMc03156 at 3114.030 kb on - strand, within SMc03156 at 3114.101 kb on + strand, within SMc03156 at 3114.221 kb on + strand, within SMc03156 at 3114.221 kb on + strand, within SMc03156 at 3114.221 kb on + strand, within SMc03156 at 3114.222 kb on - strand, within SMc03156 at 3114.222 kb on - strand, within SMc03156 at 3114.222 kb on - strand, within SMc03156 at 3114.222 kb on - strand, within SMc03156 at 3114.290 kb on + strand, within SMc03156 at 3114.291 kb on - strand, within SMc03156 at 3114.291 kb on - strand, within SMc03156 at 3114.318 kb on - strand, within SMc03156 at 3114.318 kb on - strand, within SMc03156 at 3114.331 kb on - strand, within SMc03156 at 3114.602 kb on + strand at 3114.603 kb on - strand at 3114.704 kb on - strand at 3114.715 kb on + strand at 3114.811 kb on + strand at 3115.190 kb on + strand, within SMc03157 at 3115.190 kb on + strand, within SMc03157 at 3115.191 kb on - strand, within SMc03157 at 3115.191 kb on - strand, within SMc03157 at 3115.205 kb on - strand, within SMc03157 at 3115.348 kb on + strand, within SMc03157 at 3115.348 kb on + strand, within SMc03157 at 3115.349 kb on - strand, within SMc03157 at 3115.349 kb on - strand, within SMc03157 at 3115.369 kb on + strand, within SMc03157 at 3115.371 kb on + strand, within SMc03157 at 3115.371 kb on + strand, within SMc03157 at 3115.371 kb on + strand, within SMc03157 at 3115.372 kb on - strand, within SMc03157 at 3115.372 kb on - strand, within SMc03157 at 3115.372 kb on - strand, within SMc03157
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 3,112,708 + -0.1 3,112,709 - +1.1 3,112,709 - +0.3 3,112,709 - -0.6 3,113,276 + SMc03155 0.66 +0.9 3,113,576 + -0.0 3,113,576 + -3.5 3,113,577 - +1.9 3,113,585 + +0.5 3,113,585 + -0.7 3,113,586 - +1.7 3,113,586 - -1.6 3,113,643 + +0.9 3,113,733 + -0.6 3,114,029 + SMc03156 0.39 +3.5 3,114,029 + SMc03156 0.39 +0.2 3,114,030 - SMc03156 0.39 +1.0 3,114,030 - SMc03156 0.39 +0.2 3,114,101 + SMc03156 0.47 +1.3 3,114,221 + SMc03156 0.59 +0.7 3,114,221 + SMc03156 0.59 -0.1 3,114,221 + SMc03156 0.59 +0.3 3,114,222 - SMc03156 0.60 -0.0 3,114,222 - SMc03156 0.60 -0.3 3,114,222 - SMc03156 0.60 +1.2 3,114,222 - SMc03156 0.60 +1.2 3,114,290 + SMc03156 0.67 +1.5 3,114,291 - SMc03156 0.67 +0.9 3,114,291 - SMc03156 0.67 -0.2 3,114,318 - SMc03156 0.70 +2.9 3,114,318 - SMc03156 0.70 +0.9 3,114,331 - SMc03156 0.71 -1.0 3,114,602 + +0.6 3,114,603 - +0.1 3,114,704 - +1.2 3,114,715 + -0.8 3,114,811 + +1.6 3,115,190 + SMc03157 0.57 +0.3 3,115,190 + SMc03157 0.57 +1.1 3,115,191 - SMc03157 0.58 -0.3 3,115,191 - SMc03157 0.58 +0.7 3,115,205 - SMc03157 0.59 +1.1 3,115,348 + SMc03157 0.78 +0.2 3,115,348 + SMc03157 0.78 -0.7 3,115,349 - SMc03157 0.78 +0.2 3,115,349 - SMc03157 0.78 -1.6 3,115,369 + SMc03157 0.80 -0.6 3,115,371 + SMc03157 0.81 -0.4 3,115,371 + SMc03157 0.81 -1.2 3,115,371 + SMc03157 0.81 +0.7 3,115,372 - SMc03157 0.81 +0.1 3,115,372 - SMc03157 0.81 +0.7 3,115,372 - SMc03157 0.81 +1.2
Or see this region's nucleotide sequence