Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03049 and SMc03050 are separated by 37 nucleotides SMc03050 and SMc03051 overlap by 4 nucleotides SMc03051 and SMc03052 overlap by 10 nucleotides SMc03052 and SMc03053 are separated by 6 nucleotides
SMc03049: SMc03049 - flagellar hook-associated protein FlgL, at 745,927 to 746,964
SMc03049
SMc03050: SMc03050 - flagellar biosynthesis regulatory protein FlaF, at 747,002 to 747,349
SMc03050
SMc03051: SMc03051 - flagellar biosynthesis repressor FlbT, at 747,346 to 747,795
SMc03051
SMc03052: SMc03052 - flagellar basal body rod modification protein, at 747,786 to 748,202
SMc03052
SMc03053: SMc03053 - flagellar biosynthesis protein FliQ, at 748,209 to 748,475
SMc03053
Position (kb) 747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 746.115 kb on + strand, within SMc03049 at 746.274 kb on - strand, within SMc03049 at 746.374 kb on + strand, within SMc03049 at 746.374 kb on + strand, within SMc03049 at 746.374 kb on + strand, within SMc03049 at 746.375 kb on - strand, within SMc03049 at 746.375 kb on - strand, within SMc03049 at 746.377 kb on - strand, within SMc03049 at 746.419 kb on + strand, within SMc03049 at 746.419 kb on + strand, within SMc03049 at 746.419 kb on + strand, within SMc03049 at 746.420 kb on - strand, within SMc03049 at 746.420 kb on - strand, within SMc03049 at 746.420 kb on - strand, within SMc03049 at 746.439 kb on + strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.490 kb on + strand, within SMc03049 at 746.692 kb on + strand, within SMc03049 at 746.693 kb on - strand, within SMc03049 at 746.734 kb on - strand, within SMc03049 at 746.734 kb on - strand, within SMc03049 at 746.797 kb on - strand, within SMc03049 at 746.797 kb on - strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.836 kb on - strand, within SMc03049 at 746.836 kb on - strand, within SMc03049 at 746.836 kb on - strand, within SMc03049 at 746.839 kb on - strand, within SMc03049 at 746.863 kb on + strand at 746.864 kb on - strand at 746.914 kb on + strand at 746.914 kb on + strand at 746.915 kb on - strand at 746.915 kb on - strand at 746.915 kb on - strand at 746.952 kb on - strand at 746.963 kb on - strand at 746.963 kb on - strand at 746.969 kb on + strand at 747.005 kb on + strand at 747.005 kb on + strand at 747.017 kb on + strand at 747.123 kb on - strand, within SMc03050 at 747.123 kb on - strand, within SMc03050 at 747.149 kb on + strand, within SMc03050 at 747.149 kb on + strand, within SMc03050 at 747.318 kb on + strand at 747.318 kb on + strand at 747.318 kb on + strand at 747.318 kb on + strand at 747.319 kb on - strand at 747.319 kb on - strand at 747.363 kb on + strand at 747.363 kb on + strand at 747.364 kb on - strand at 747.364 kb on - strand at 747.396 kb on - strand, within SMc03051 at 747.517 kb on + strand, within SMc03051 at 747.518 kb on - strand, within SMc03051 at 747.726 kb on - strand, within SMc03051 at 747.767 kb on + strand at 747.822 kb on + strand at 747.823 kb on - strand at 747.823 kb on - strand at 747.882 kb on + strand, within SMc03052 at 747.883 kb on - strand, within SMc03052 at 748.126 kb on + strand, within SMc03052 at 748.127 kb on - strand, within SMc03052 at 748.129 kb on - strand, within SMc03052 at 748.192 kb on + strand at 748.237 kb on + strand, within SMc03053 at 748.238 kb on - strand, within SMc03053
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 746,115 + SMc03049 0.18 -0.8 746,274 - SMc03049 0.33 +2.1 746,374 + SMc03049 0.43 -0.8 746,374 + SMc03049 0.43 +1.0 746,374 + SMc03049 0.43 -1.7 746,375 - SMc03049 0.43 -0.8 746,375 - SMc03049 0.43 +0.8 746,377 - SMc03049 0.43 -1.5 746,419 + SMc03049 0.47 -0.4 746,419 + SMc03049 0.47 +0.3 746,419 + SMc03049 0.47 +1.6 746,420 - SMc03049 0.47 -0.7 746,420 - SMc03049 0.47 -0.5 746,420 - SMc03049 0.47 +0.8 746,439 + SMc03049 0.49 -2.5 746,440 - SMc03049 0.49 +0.0 746,440 - SMc03049 0.49 +0.5 746,440 - SMc03049 0.49 +0.9 746,440 - SMc03049 0.49 -2.6 746,490 + SMc03049 0.54 -1.7 746,692 + SMc03049 0.74 +0.7 746,693 - SMc03049 0.74 -1.4 746,734 - SMc03049 0.78 -0.7 746,734 - SMc03049 0.78 -0.1 746,797 - SMc03049 0.84 -3.2 746,797 - SMc03049 0.84 +0.0 746,835 + SMc03049 0.87 -0.3 746,835 + SMc03049 0.87 -0.0 746,835 + SMc03049 0.87 +1.1 746,835 + SMc03049 0.87 +2.2 746,835 + SMc03049 0.87 -1.0 746,836 - SMc03049 0.88 -2.3 746,836 - SMc03049 0.88 +1.1 746,836 - SMc03049 0.88 +1.4 746,839 - SMc03049 0.88 +0.2 746,863 + +0.3 746,864 - +0.8 746,914 + -0.0 746,914 + +1.3 746,915 - +0.1 746,915 - +1.2 746,915 - -0.6 746,952 - +0.8 746,963 - -0.5 746,963 - -0.2 746,969 + -0.2 747,005 + -0.7 747,005 + -1.2 747,017 + -0.0 747,123 - SMc03050 0.35 -1.8 747,123 - SMc03050 0.35 -0.4 747,149 + SMc03050 0.42 -0.9 747,149 + SMc03050 0.42 -0.9 747,318 + -1.0 747,318 + -2.4 747,318 + +1.0 747,318 + +0.8 747,319 - +0.8 747,319 - +1.8 747,363 + +0.5 747,363 + -0.3 747,364 - -1.0 747,364 - +1.0 747,396 - SMc03051 0.11 +1.4 747,517 + SMc03051 0.38 -1.8 747,518 - SMc03051 0.38 +0.8 747,726 - SMc03051 0.84 +0.4 747,767 + +0.5 747,822 + -0.5 747,823 - +0.8 747,823 - +0.0 747,882 + SMc03052 0.23 +0.3 747,883 - SMc03052 0.23 -0.5 748,126 + SMc03052 0.82 +1.2 748,127 - SMc03052 0.82 +0.8 748,129 - SMc03052 0.82 +0.0 748,192 + -0.2 748,237 + SMc03053 0.10 +0.5 748,238 - SMc03053 0.11 -1.0
Or see this region's nucleotide sequence