Strain Fitness in Sinorhizobium meliloti 1021 around SMc03002

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03001 and SMc03002 are separated by 10 nucleotidesSMc03002 and SMc03003 overlap by 4 nucleotides SMc03001: SMc03001 - ABC transporter permease, at 698,751 to 699,755 SMc03001 SMc03002: SMc03002 - hypothetical protein, at 699,766 to 700,080 SMc03002 SMc03003: SMc03003 - Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) (from data), at 700,077 to 701,465 SMc03003 Position (kb) 699 700 701Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 698.889 kb on + strand, within SMc03001at 699.040 kb on - strand, within SMc03001at 699.264 kb on + strand, within SMc03001at 699.264 kb on + strand, within SMc03001at 699.264 kb on + strand, within SMc03001at 699.264 kb on + strand, within SMc03001at 699.265 kb on - strand, within SMc03001at 699.321 kb on + strand, within SMc03001at 699.363 kb on + strand, within SMc03001at 699.399 kb on + strand, within SMc03001at 699.776 kb on - strandat 699.817 kb on + strand, within SMc03002at 699.818 kb on - strand, within SMc03002at 699.887 kb on - strand, within SMc03002at 700.002 kb on + strand, within SMc03002at 700.106 kb on + strandat 700.255 kb on + strand, within SMc03003at 700.366 kb on - strand, within SMc03003at 700.401 kb on + strand, within SMc03003at 700.401 kb on + strand, within SMc03003at 700.537 kb on - strand, within SMc03003at 700.545 kb on + strand, within SMc03003at 700.546 kb on - strand, within SMc03003at 700.812 kb on - strand, within SMc03003at 700.835 kb on - strand, within SMc03003at 700.974 kb on + strand, within SMc03003at 701.048 kb on + strand, within SMc03003at 701.048 kb on + strand, within SMc03003at 701.049 kb on - strand, within SMc03003at 701.049 kb on - strand, within SMc03003at 701.049 kb on - strand, within SMc03003at 701.049 kb on - strand, within SMc03003

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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698,889 + SMc03001 0.14 +0.7
699,040 - SMc03001 0.29 -1.8
699,264 + SMc03001 0.51 -0.7
699,264 + SMc03001 0.51 -0.3
699,264 + SMc03001 0.51 -0.3
699,264 + SMc03001 0.51 -0.1
699,265 - SMc03001 0.51 +0.3
699,321 + SMc03001 0.57 -0.8
699,363 + SMc03001 0.61 -1.2
699,399 + SMc03001 0.64 -1.8
699,776 - +0.5
699,817 + SMc03002 0.16 -0.1
699,818 - SMc03002 0.17 -2.1
699,887 - SMc03002 0.38 -1.6
700,002 + SMc03002 0.75 -0.8
700,106 + -2.2
700,255 + SMc03003 0.13 -0.1
700,366 - SMc03003 0.21 -0.1
700,401 + SMc03003 0.23 -0.5
700,401 + SMc03003 0.23 +0.5
700,537 - SMc03003 0.33 -2.3
700,545 + SMc03003 0.34 -2.5
700,546 - SMc03003 0.34 +2.8
700,812 - SMc03003 0.53 +0.2
700,835 - SMc03003 0.55 +0.1
700,974 + SMc03003 0.65 +0.0
701,048 + SMc03003 0.70 -0.6
701,048 + SMc03003 0.70 -3.0
701,049 - SMc03003 0.70 -2.6
701,049 - SMc03003 0.70 +0.1
701,049 - SMc03003 0.70 +4.5
701,049 - SMc03003 0.70 -0.2

Or see this region's nucleotide sequence