Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01932 and SMc01933 overlap by 7 nucleotides SMc01933 and SMc01934 are separated by 710 nucleotides SMc01934 and SMc01935 are separated by 104 nucleotides
SMc01932: SMc01932 - hypothetical protein, at 1,397,530 to 1,397,895
SMc01932
SMc01933: SMc01933 - hypothetical protein, at 1,397,889 to 1,398,104
SMc01933
SMc01934: SMc01934 - prolyl-tRNA synthetase, at 1,398,815 to 1,400,143
SMc01934
SMc01935: SMc01935 - hypothetical protein, at 1,400,248 to 1,401,474
SMc01935
Position (kb)
1398
1399
1400
1401 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1397.868 kb on + strand at 1397.868 kb on + strand at 1397.874 kb on + strand at 1397.891 kb on - strand at 1397.996 kb on - strand, within SMc01933 at 1397.996 kb on - strand, within SMc01933 at 1398.127 kb on + strand at 1398.127 kb on + strand at 1398.127 kb on + strand at 1398.128 kb on - strand at 1398.128 kb on - strand at 1398.131 kb on + strand at 1398.324 kb on + strand at 1398.324 kb on - strand at 1398.359 kb on - strand at 1398.359 kb on - strand at 1398.582 kb on - strand at 1398.643 kb on + strand at 1398.784 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 1,397,868 + -0.2 1,397,868 + +0.7 1,397,874 + +0.3 1,397,891 - +1.7 1,397,996 - SMc01933 0.50 +1.5 1,397,996 - SMc01933 0.50 -1.6 1,398,127 + +0.9 1,398,127 + -0.5 1,398,127 + -1.6 1,398,128 - -2.1 1,398,128 - -0.5 1,398,131 + -0.1 1,398,324 + +2.0 1,398,324 - +0.7 1,398,359 - +1.0 1,398,359 - +1.2 1,398,582 - -3.6 1,398,643 + -0.1 1,398,784 + +0.2
Or see this region's nucleotide sequence