Strain Fitness in Sinorhizobium meliloti 1021 around SMc01194

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01195 and SMc01194 are separated by 393 nucleotidesSMc01194 and SMc01193 are separated by 1 nucleotidesSMc01193 and SMc01192 are separated by 14 nucleotides SMc01195: SMc01195 - hypothetical protein, at 1,735,136 to 1,735,546 SMc01195 SMc01194: SMc01194 - hypothetical protein, at 1,735,940 to 1,736,776 SMc01194 SMc01193: SMc01193 - hypothetical protein, at 1,736,778 to 1,737,557 SMc01193 SMc01192: SMc01192 - methionyl-tRNA synthetase, at 1,737,572 to 1,739,122 SMc01192 Position (kb) 1735 1736 1737Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1734.972 kb on + strandat 1734.973 kb on - strandat 1735.046 kb on + strandat 1735.046 kb on + strandat 1735.046 kb on + strandat 1735.046 kb on + strandat 1735.047 kb on - strandat 1735.047 kb on - strandat 1735.047 kb on - strandat 1735.047 kb on - strandat 1735.047 kb on - strandat 1735.064 kb on + strandat 1735.064 kb on + strandat 1735.102 kb on + strandat 1735.171 kb on - strandat 1735.171 kb on - strandat 1735.171 kb on - strandat 1735.533 kb on + strandat 1735.533 kb on + strandat 1735.534 kb on - strandat 1735.534 kb on - strandat 1735.608 kb on + strandat 1735.616 kb on + strandat 1735.616 kb on + strandat 1735.882 kb on - strandat 1735.995 kb on + strandat 1735.995 kb on + strandat 1735.995 kb on + strandat 1736.041 kb on - strand, within SMc01194at 1736.059 kb on + strand, within SMc01194at 1736.059 kb on + strand, within SMc01194at 1736.059 kb on + strand, within SMc01194at 1736.059 kb on + strand, within SMc01194at 1736.145 kb on + strand, within SMc01194at 1736.146 kb on - strand, within SMc01194at 1736.146 kb on - strand, within SMc01194at 1736.230 kb on - strand, within SMc01194at 1736.355 kb on + strand, within SMc01194at 1736.356 kb on - strand, within SMc01194at 1736.356 kb on - strand, within SMc01194at 1736.535 kb on + strand, within SMc01194at 1736.536 kb on - strand, within SMc01194at 1736.559 kb on - strand, within SMc01194at 1736.645 kb on + strand, within SMc01194at 1736.893 kb on + strand, within SMc01193at 1736.893 kb on + strand, within SMc01193at 1736.894 kb on - strand, within SMc01193at 1737.043 kb on + strand, within SMc01193at 1737.044 kb on - strand, within SMc01193at 1737.044 kb on - strand, within SMc01193at 1737.044 kb on - strand, within SMc01193at 1737.044 kb on - strand, within SMc01193at 1737.044 kb on - strand, within SMc01193at 1737.152 kb on + strand, within SMc01193at 1737.173 kb on + strand, within SMc01193at 1737.173 kb on + strand, within SMc01193at 1737.173 kb on + strand, within SMc01193at 1737.173 kb on + strand, within SMc01193at 1737.173 kb on + strand, within SMc01193at 1737.173 kb on + strand, within SMc01193at 1737.174 kb on - strand, within SMc01193at 1737.174 kb on - strand, within SMc01193at 1737.174 kb on - strand, within SMc01193at 1737.177 kb on + strand, within SMc01193at 1737.177 kb on + strand, within SMc01193at 1737.177 kb on + strand, within SMc01193at 1737.177 kb on + strand, within SMc01193at 1737.178 kb on - strand, within SMc01193at 1737.178 kb on - strand, within SMc01193at 1737.178 kb on - strand, within SMc01193at 1737.215 kb on + strand, within SMc01193at 1737.452 kb on + strand, within SMc01193

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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1,734,972 + -0.4
1,734,973 - +1.6
1,735,046 + -0.6
1,735,046 + +1.4
1,735,046 + +0.9
1,735,046 + +1.5
1,735,047 - +1.5
1,735,047 - +0.1
1,735,047 - +0.1
1,735,047 - -1.6
1,735,047 - -2.4
1,735,064 + -3.4
1,735,064 + +3.3
1,735,102 + +1.1
1,735,171 - +0.4
1,735,171 - +0.1
1,735,171 - -0.4
1,735,533 + +1.1
1,735,533 + +1.5
1,735,534 - +0.3
1,735,534 - -0.7
1,735,608 + -0.7
1,735,616 + -0.9
1,735,616 + -1.1
1,735,882 - +0.9
1,735,995 + +0.4
1,735,995 + -1.8
1,735,995 + -0.6
1,736,041 - SMc01194 0.12 -0.2
1,736,059 + SMc01194 0.14 -0.5
1,736,059 + SMc01194 0.14 +0.4
1,736,059 + SMc01194 0.14 -0.6
1,736,059 + SMc01194 0.14 +2.1
1,736,145 + SMc01194 0.24 +0.8
1,736,146 - SMc01194 0.25 -0.4
1,736,146 - SMc01194 0.25 -0.3
1,736,230 - SMc01194 0.35 +0.8
1,736,355 + SMc01194 0.50 +0.7
1,736,356 - SMc01194 0.50 +0.1
1,736,356 - SMc01194 0.50 -0.9
1,736,535 + SMc01194 0.71 +1.4
1,736,536 - SMc01194 0.71 +1.1
1,736,559 - SMc01194 0.74 +0.0
1,736,645 + SMc01194 0.84 +0.4
1,736,893 + SMc01193 0.15 -1.6
1,736,893 + SMc01193 0.15 +1.4
1,736,894 - SMc01193 0.15 +0.2
1,737,043 + SMc01193 0.34 +1.8
1,737,044 - SMc01193 0.34 +0.7
1,737,044 - SMc01193 0.34 +0.5
1,737,044 - SMc01193 0.34 +1.2
1,737,044 - SMc01193 0.34 +0.4
1,737,044 - SMc01193 0.34 +0.0
1,737,152 + SMc01193 0.48 -1.0
1,737,173 + SMc01193 0.51 +2.0
1,737,173 + SMc01193 0.51 +1.0
1,737,173 + SMc01193 0.51 -0.5
1,737,173 + SMc01193 0.51 +0.1
1,737,173 + SMc01193 0.51 +1.4
1,737,173 + SMc01193 0.51 +1.1
1,737,174 - SMc01193 0.51 +0.8
1,737,174 - SMc01193 0.51 -0.0
1,737,174 - SMc01193 0.51 +0.2
1,737,177 + SMc01193 0.51 +1.8
1,737,177 + SMc01193 0.51 -0.2
1,737,177 + SMc01193 0.51 +2.7
1,737,177 + SMc01193 0.51 +1.1
1,737,178 - SMc01193 0.51 +0.0
1,737,178 - SMc01193 0.51 +3.5
1,737,178 - SMc01193 0.51 -0.5
1,737,215 + SMc01193 0.56 +0.9
1,737,452 + SMc01193 0.86 +0.5

Or see this region's nucleotide sequence