Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01161 and SMc01160 are separated by 142 nucleotides SMc01160 and SMc01159 overlap by 11 nucleotides SMc01159 and SMc01158 are separated by 117 nucleotides SMc01158 and SMc01157 are separated by 104 nucleotides
SMc01161: SMc01161 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 389,277 to 390,482
SMc01161
SMc01160: SMc01160 - hypothetical protein, at 390,625 to 391,083
SMc01160
SMc01159: SMc01159 - oxidoreductase, at 391,073 to 391,978
SMc01159
SMc01158: SMc01158 - hypothetical protein, at 392,096 to 392,701
SMc01158
SMc01157: SMc01157 - oxidoreductase, at 392,806 to 393,585
SMc01157
Position (kb) 391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 390.526 kb on - strand at 390.651 kb on + strand at 390.762 kb on - strand, within SMc01160 at 390.878 kb on + strand, within SMc01160 at 391.121 kb on + strand at 391.121 kb on + strand at 391.482 kb on - strand, within SMc01159 at 391.493 kb on + strand, within SMc01159 at 391.494 kb on - strand, within SMc01159 at 391.823 kb on + strand, within SMc01159 at 391.824 kb on - strand, within SMc01159 at 391.824 kb on - strand, within SMc01159 at 391.868 kb on + strand, within SMc01159 at 391.869 kb on - strand, within SMc01159 at 391.869 kb on - strand, within SMc01159 at 391.869 kb on - strand, within SMc01159 at 391.869 kb on - strand, within SMc01159 at 391.952 kb on - strand at 391.952 kb on - strand at 391.952 kb on - strand at 392.089 kb on + strand at 392.089 kb on + strand at 392.182 kb on + strand at 392.313 kb on - strand, within SMc01158 at 392.421 kb on - strand, within SMc01158 at 392.453 kb on + strand, within SMc01158 at 392.454 kb on - strand, within SMc01158 at 392.454 kb on - strand, within SMc01158 at 392.482 kb on - strand, within SMc01158 at 392.482 kb on - strand, within SMc01158 at 392.482 kb on - strand, within SMc01158 at 392.482 kb on - strand, within SMc01158 at 392.487 kb on + strand at 392.487 kb on + strand, within SMc01158 at 392.488 kb on - strand, within SMc01158 at 392.488 kb on - strand, within SMc01158 at 392.488 kb on - strand, within SMc01158 at 392.488 kb on - strand, within SMc01158 at 392.636 kb on + strand, within SMc01158 at 392.861 kb on + strand at 392.862 kb on - strand at 392.862 kb on - strand at 392.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 390,526 - -1.0 390,651 + -1.1 390,762 - SMc01160 0.30 -0.2 390,878 + SMc01160 0.55 -0.8 391,121 + -2.2 391,121 + +1.1 391,482 - SMc01159 0.45 +0.0 391,493 + SMc01159 0.46 -0.8 391,494 - SMc01159 0.46 +0.6 391,823 + SMc01159 0.83 -0.1 391,824 - SMc01159 0.83 -0.6 391,824 - SMc01159 0.83 -3.1 391,868 + SMc01159 0.88 -0.1 391,869 - SMc01159 0.88 -0.9 391,869 - SMc01159 0.88 -1.7 391,869 - SMc01159 0.88 -0.5 391,869 - SMc01159 0.88 -0.5 391,952 - +0.7 391,952 - +0.0 391,952 - -0.2 392,089 + -1.7 392,089 + -0.1 392,182 + +0.9 392,313 - SMc01158 0.36 -1.4 392,421 - SMc01158 0.54 -1.4 392,453 + SMc01158 0.59 +0.9 392,454 - SMc01158 0.59 +0.9 392,454 - SMc01158 0.59 +0.2 392,482 - SMc01158 0.64 +0.4 392,482 - SMc01158 0.64 -1.2 392,482 - SMc01158 0.64 -0.7 392,482 - SMc01158 0.64 -0.3 392,487 + +1.3 392,487 + SMc01158 0.65 -1.4 392,488 - SMc01158 0.65 -0.0 392,488 - SMc01158 0.65 +0.4 392,488 - SMc01158 0.65 +0.0 392,488 - SMc01158 0.65 -0.2 392,636 + SMc01158 0.89 +0.3 392,861 + -0.5 392,862 - +0.2 392,862 - +0.3 392,862 - -0.7
Or see this region's nucleotide sequence