Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00558 and SMc00559 are separated by 64 nucleotides SMc00559 and SMc00560 overlap by 4 nucleotides SMc00560 and SMc00561 are separated by 151 nucleotides
SMc00558: SMc00558 - transcriptional regulator, at 1,228,768 to 1,229,625
SMc00558
SMc00559: SMc00559 - hypothetical protein, at 1,229,690 to 1,230,460
SMc00559
SMc00560: SMc00560 - hypothetical protein, at 1,230,457 to 1,230,759
SMc00560
SMc00561: SMc00561 - replicative DNA helicase, at 1,230,911 to 1,232,410
SMc00561
Position (kb)
1229
1230
1231 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1228.756 kb on + strand at 1228.757 kb on - strand at 1228.929 kb on - strand, within SMc00558 at 1228.929 kb on - strand, within SMc00558 at 1228.929 kb on - strand, within SMc00558 at 1228.929 kb on - strand, within SMc00558 at 1229.002 kb on + strand, within SMc00558 at 1229.002 kb on + strand, within SMc00558 at 1229.002 kb on + strand, within SMc00558 at 1229.002 kb on + strand, within SMc00558 at 1229.003 kb on - strand, within SMc00558 at 1229.003 kb on - strand, within SMc00558 at 1229.003 kb on - strand, within SMc00558 at 1229.072 kb on - strand, within SMc00558 at 1229.072 kb on - strand, within SMc00558 at 1229.072 kb on - strand, within SMc00558 at 1229.099 kb on + strand, within SMc00558 at 1229.099 kb on + strand, within SMc00558 at 1229.100 kb on - strand, within SMc00558 at 1229.289 kb on + strand, within SMc00558 at 1229.290 kb on - strand, within SMc00558 at 1229.344 kb on + strand, within SMc00558 at 1229.344 kb on + strand, within SMc00558 at 1229.360 kb on - strand, within SMc00558 at 1229.536 kb on + strand, within SMc00558 at 1229.537 kb on - strand, within SMc00558 at 1229.661 kb on + strand at 1229.662 kb on - strand at 1229.662 kb on - strand at 1229.730 kb on + strand at 1229.743 kb on - strand at 1230.071 kb on + strand, within SMc00559 at 1230.072 kb on - strand, within SMc00559 at 1230.072 kb on - strand, within SMc00559 at 1230.155 kb on + strand, within SMc00559 at 1230.180 kb on - strand, within SMc00559 at 1230.180 kb on - strand, within SMc00559 at 1230.386 kb on + strand at 1230.387 kb on - strand at 1230.387 kb on - strand at 1230.558 kb on - strand, within SMc00560 at 1230.558 kb on - strand, within SMc00560 at 1230.757 kb on + strand at 1230.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 1,228,756 + +0.7 1,228,757 - +0.3 1,228,929 - SMc00558 0.19 -0.4 1,228,929 - SMc00558 0.19 -1.9 1,228,929 - SMc00558 0.19 +1.3 1,228,929 - SMc00558 0.19 +1.6 1,229,002 + SMc00558 0.27 +1.2 1,229,002 + SMc00558 0.27 +0.4 1,229,002 + SMc00558 0.27 -0.3 1,229,002 + SMc00558 0.27 +0.3 1,229,003 - SMc00558 0.27 +1.8 1,229,003 - SMc00558 0.27 -0.7 1,229,003 - SMc00558 0.27 -2.2 1,229,072 - SMc00558 0.35 +2.1 1,229,072 - SMc00558 0.35 -0.2 1,229,072 - SMc00558 0.35 -0.5 1,229,099 + SMc00558 0.39 +0.8 1,229,099 + SMc00558 0.39 +0.8 1,229,100 - SMc00558 0.39 +1.9 1,229,289 + SMc00558 0.61 +0.0 1,229,290 - SMc00558 0.61 +0.3 1,229,344 + SMc00558 0.67 -0.1 1,229,344 + SMc00558 0.67 +0.8 1,229,360 - SMc00558 0.69 -0.1 1,229,536 + SMc00558 0.90 -0.6 1,229,537 - SMc00558 0.90 +0.1 1,229,661 + +0.5 1,229,662 - +0.2 1,229,662 - +0.8 1,229,730 + -0.2 1,229,743 - +0.8 1,230,071 + SMc00559 0.49 -0.6 1,230,072 - SMc00559 0.50 -2.4 1,230,072 - SMc00559 0.50 +0.8 1,230,155 + SMc00559 0.60 -0.2 1,230,180 - SMc00559 0.64 +0.5 1,230,180 - SMc00559 0.64 +1.4 1,230,386 + -0.1 1,230,387 - +0.9 1,230,387 - +0.1 1,230,558 - SMc00560 0.33 -0.2 1,230,558 - SMc00560 0.33 +0.6 1,230,757 + -0.7 1,230,922 - +0.4
Or see this region's nucleotide sequence