Strain Fitness in Sinorhizobium meliloti 1021 around SMc00041

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00100 and SMc00041 are separated by 290 nucleotidesSMc00041 and SMc00101 are separated by 63 nucleotides SMc00100: SMc00100 - hypothetical protein, at 1,058,318 to 1,059,880 SMc00100 SMc00041: SMc00041 - hypothetical protein, at 1,060,171 to 1,060,566 SMc00041 SMc00101: SMc00101 - oxidoreductase, at 1,060,630 to 1,061,457 SMc00101 Position (kb) 1060 1061Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1059.378 kb on + strand, within SMc00100at 1059.379 kb on - strand, within SMc00100at 1059.555 kb on + strand, within SMc00100at 1059.595 kb on - strand, within SMc00100at 1059.858 kb on + strandat 1059.858 kb on + strandat 1059.859 kb on - strandat 1059.859 kb on - strandat 1059.859 kb on - strandat 1059.859 kb on - strandat 1059.926 kb on - strandat 1059.926 kb on - strandat 1059.963 kb on + strandat 1059.964 kb on - strandat 1059.977 kb on + strandat 1059.978 kb on - strandat 1059.980 kb on - strandat 1060.079 kb on - strandat 1060.083 kb on + strandat 1060.336 kb on + strand, within SMc00041at 1060.337 kb on - strand, within SMc00041at 1060.337 kb on - strand, within SMc00041at 1060.907 kb on + strand, within SMc00101at 1060.907 kb on + strand, within SMc00101at 1060.907 kb on + strand, within SMc00101at 1060.907 kb on + strand, within SMc00101at 1060.908 kb on - strand, within SMc00101at 1060.908 kb on - strand, within SMc00101at 1060.908 kb on - strand, within SMc00101at 1060.910 kb on + strand, within SMc00101at 1060.910 kb on + strand, within SMc00101at 1060.971 kb on - strand, within SMc00101at 1060.979 kb on + strand, within SMc00101at 1060.979 kb on + strand, within SMc00101at 1061.071 kb on + strand, within SMc00101at 1061.072 kb on - strand, within SMc00101at 1061.072 kb on - strand, within SMc00101at 1061.072 kb on - strand, within SMc00101at 1061.072 kb on - strand, within SMc00101at 1061.225 kb on + strand, within SMc00101at 1061.226 kb on - strand, within SMc00101at 1061.318 kb on + strand, within SMc00101at 1061.397 kb on + strandat 1061.397 kb on + strandat 1061.397 kb on + strandat 1061.397 kb on + strandat 1061.398 kb on - strandat 1061.466 kb on - strandat 1061.507 kb on + strandat 1061.507 kb on + strandat 1061.507 kb on + strandat 1061.507 kb on + strandat 1061.508 kb on - strandat 1061.508 kb on - strandat 1061.509 kb on + strandat 1061.509 kb on + strandat 1061.509 kb on + strandat 1061.509 kb on + strandat 1061.509 kb on + strandat 1061.509 kb on + strandat 1061.509 kb on + strandat 1061.509 kb on + strandat 1061.509 kb on + strandat 1061.510 kb on - strandat 1061.510 kb on - strandat 1061.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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1,059,378 + SMc00100 0.68 -0.3
1,059,379 - SMc00100 0.68 +0.1
1,059,555 + SMc00100 0.79 -2.5
1,059,595 - SMc00100 0.82 +0.3
1,059,858 + -0.4
1,059,858 + -2.0
1,059,859 - -0.8
1,059,859 - +0.6
1,059,859 - +0.3
1,059,859 - +1.6
1,059,926 - -2.0
1,059,926 - +0.2
1,059,963 + -0.4
1,059,964 - -0.2
1,059,977 + -1.7
1,059,978 - +0.5
1,059,980 - -0.5
1,060,079 - +0.8
1,060,083 + -0.5
1,060,336 + SMc00041 0.42 -1.6
1,060,337 - SMc00041 0.42 -0.1
1,060,337 - SMc00041 0.42 -1.8
1,060,907 + SMc00101 0.33 -0.6
1,060,907 + SMc00101 0.33 -1.1
1,060,907 + SMc00101 0.33 -0.7
1,060,907 + SMc00101 0.33 +0.1
1,060,908 - SMc00101 0.34 +0.1
1,060,908 - SMc00101 0.34 +0.6
1,060,908 - SMc00101 0.34 -1.3
1,060,910 + SMc00101 0.34 +0.8
1,060,910 + SMc00101 0.34 +0.3
1,060,971 - SMc00101 0.41 +1.3
1,060,979 + SMc00101 0.42 -0.0
1,060,979 + SMc00101 0.42 -0.4
1,061,071 + SMc00101 0.53 -0.8
1,061,072 - SMc00101 0.53 -0.1
1,061,072 - SMc00101 0.53 -1.4
1,061,072 - SMc00101 0.53 -1.6
1,061,072 - SMc00101 0.53 -1.2
1,061,225 + SMc00101 0.72 +0.1
1,061,226 - SMc00101 0.72 +0.8
1,061,318 + SMc00101 0.83 -1.7
1,061,397 + -0.6
1,061,397 + -0.2
1,061,397 + -2.4
1,061,397 + -0.1
1,061,398 - +0.2
1,061,466 - -0.6
1,061,507 + -0.6
1,061,507 + -0.8
1,061,507 + -0.1
1,061,507 + -1.2
1,061,508 - +0.8
1,061,508 - +0.1
1,061,509 + +2.8
1,061,509 + +1.4
1,061,509 + +0.9
1,061,509 + +0.8
1,061,509 + +1.2
1,061,509 + -0.2
1,061,509 + -1.6
1,061,509 + -0.8
1,061,509 + -0.6
1,061,510 - -0.5
1,061,510 - -0.7
1,061,510 - -0.8

Or see this region's nucleotide sequence