Strain Fitness in Sinorhizobium meliloti 1021 around SMa2151

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2147 and SMa2151 are separated by 712 nucleotides SMa2147: SMa2147 - hypothetical protein, at 1,213,698 to 1,214,588 SMa2147 SMa2151: SMa2151 - DNA-binding protein, at 1,215,301 to 1,215,624 SMa2151 Position (kb) 1215 1216Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1214.363 kb on - strand, within SMa2147at 1214.384 kb on + strand, within SMa2147at 1214.384 kb on + strand, within SMa2147at 1214.520 kb on + strandat 1214.521 kb on - strandat 1214.751 kb on + strandat 1214.752 kb on - strandat 1214.773 kb on + strandat 1214.774 kb on - strandat 1214.788 kb on + strandat 1214.788 kb on + strandat 1214.789 kb on - strandat 1214.789 kb on - strandat 1214.886 kb on + strandat 1214.887 kb on - strandat 1214.899 kb on + strandat 1214.900 kb on - strandat 1214.931 kb on - strandat 1215.153 kb on - strandat 1215.167 kb on + strandat 1215.168 kb on - strandat 1215.287 kb on - strandat 1215.367 kb on + strand, within SMa2151at 1215.367 kb on + strand, within SMa2151at 1215.367 kb on + strand, within SMa2151at 1215.368 kb on - strand, within SMa2151at 1215.368 kb on - strand, within SMa2151at 1215.368 kb on - strand, within SMa2151at 1215.622 kb on + strandat 1215.675 kb on - strandat 1215.734 kb on - strandat 1215.736 kb on + strandat 1215.737 kb on - strandat 1215.737 kb on - strandat 1215.884 kb on + strandat 1215.907 kb on - strandat 1216.034 kb on + strandat 1216.035 kb on - strandat 1216.036 kb on + strandat 1216.036 kb on + strandat 1216.037 kb on - strandat 1216.037 kb on - strandat 1216.037 kb on - strandat 1216.117 kb on - strandat 1216.148 kb on + strandat 1216.149 kb on - strandat 1216.208 kb on + strandat 1216.208 kb on + strandat 1216.236 kb on - strandat 1216.236 kb on - strandat 1216.366 kb on + strandat 1216.366 kb on + strandat 1216.366 kb on + strandat 1216.367 kb on - strandat 1216.367 kb on - strandat 1216.367 kb on - strandat 1216.431 kb on + strandat 1216.473 kb on + strandat 1216.474 kb on - strandat 1216.598 kb on + strandat 1216.599 kb on - strandat 1216.599 kb on - strandat 1216.610 kb on + strandat 1216.610 kb on + strandat 1216.611 kb on - strandat 1216.611 kb on - strandat 1216.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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1,214,363 - SMa2147 0.75 +1.1
1,214,384 + SMa2147 0.77 -0.3
1,214,384 + SMa2147 0.77 +0.7
1,214,520 + -0.5
1,214,521 - -0.2
1,214,751 + -1.1
1,214,752 - -2.3
1,214,773 + +1.6
1,214,774 - -0.7
1,214,788 + +0.6
1,214,788 + +0.1
1,214,789 - +0.1
1,214,789 - -2.7
1,214,886 + +0.1
1,214,887 - -0.7
1,214,899 + -1.7
1,214,900 - -0.3
1,214,931 - -3.4
1,215,153 - +2.1
1,215,167 + +2.1
1,215,168 - +1.7
1,215,287 - -0.2
1,215,367 + SMa2151 0.20 +0.1
1,215,367 + SMa2151 0.20 +3.8
1,215,367 + SMa2151 0.20 +1.9
1,215,368 - SMa2151 0.21 +1.4
1,215,368 - SMa2151 0.21 +4.2
1,215,368 - SMa2151 0.21 +0.3
1,215,622 + -2.2
1,215,675 - -2.0
1,215,734 - +1.1
1,215,736 + +1.4
1,215,737 - +2.4
1,215,737 - +0.8
1,215,884 + -3.1
1,215,907 - -1.0
1,216,034 + -0.6
1,216,035 - +0.1
1,216,036 + +0.1
1,216,036 + -2.3
1,216,037 - +1.9
1,216,037 - +1.1
1,216,037 - -2.3
1,216,117 - -0.5
1,216,148 + -0.9
1,216,149 - +0.7
1,216,208 + -0.2
1,216,208 + -1.9
1,216,236 - +1.1
1,216,236 - +0.6
1,216,366 + +2.7
1,216,366 + +0.0
1,216,366 + +0.8
1,216,367 - -0.9
1,216,367 - +2.8
1,216,367 - -0.0
1,216,431 + +1.0
1,216,473 + -3.4
1,216,474 - +2.9
1,216,598 + +0.4
1,216,599 - +3.1
1,216,599 - +0.1
1,216,610 + -1.8
1,216,610 + +0.1
1,216,611 - +0.6
1,216,611 - +4.3
1,216,615 + -2.6

Or see this region's nucleotide sequence