Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2147 and SMa2151 are separated by 712 nucleotides
SMa2147: SMa2147 - hypothetical protein, at 1,213,698 to 1,214,588
SMa2147
SMa2151: SMa2151 - DNA-binding protein, at 1,215,301 to 1,215,624
SMa2151
Position (kb)
1215
1216 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1214.363 kb on - strand, within SMa2147 at 1214.384 kb on + strand, within SMa2147 at 1214.384 kb on + strand, within SMa2147 at 1214.520 kb on + strand at 1214.521 kb on - strand at 1214.751 kb on + strand at 1214.752 kb on - strand at 1214.773 kb on + strand at 1214.774 kb on - strand at 1214.788 kb on + strand at 1214.788 kb on + strand at 1214.789 kb on - strand at 1214.789 kb on - strand at 1214.886 kb on + strand at 1214.887 kb on - strand at 1214.899 kb on + strand at 1214.900 kb on - strand at 1214.931 kb on - strand at 1215.153 kb on - strand at 1215.167 kb on + strand at 1215.168 kb on - strand at 1215.287 kb on - strand at 1215.367 kb on + strand, within SMa2151 at 1215.367 kb on + strand, within SMa2151 at 1215.367 kb on + strand, within SMa2151 at 1215.368 kb on - strand, within SMa2151 at 1215.368 kb on - strand, within SMa2151 at 1215.368 kb on - strand, within SMa2151 at 1215.622 kb on + strand at 1215.675 kb on - strand at 1215.734 kb on - strand at 1215.736 kb on + strand at 1215.737 kb on - strand at 1215.737 kb on - strand at 1215.884 kb on + strand at 1215.907 kb on - strand at 1216.034 kb on + strand at 1216.035 kb on - strand at 1216.036 kb on + strand at 1216.036 kb on + strand at 1216.037 kb on - strand at 1216.037 kb on - strand at 1216.037 kb on - strand at 1216.117 kb on - strand at 1216.148 kb on + strand at 1216.149 kb on - strand at 1216.208 kb on + strand at 1216.208 kb on + strand at 1216.236 kb on - strand at 1216.236 kb on - strand at 1216.366 kb on + strand at 1216.366 kb on + strand at 1216.366 kb on + strand at 1216.367 kb on - strand at 1216.367 kb on - strand at 1216.367 kb on - strand at 1216.431 kb on + strand at 1216.473 kb on + strand at 1216.474 kb on - strand at 1216.598 kb on + strand at 1216.599 kb on - strand at 1216.599 kb on - strand at 1216.610 kb on + strand at 1216.610 kb on + strand at 1216.611 kb on - strand at 1216.611 kb on - strand at 1216.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 1,214,363 - SMa2147 0.75 +1.1 1,214,384 + SMa2147 0.77 -0.3 1,214,384 + SMa2147 0.77 +0.7 1,214,520 + -0.5 1,214,521 - -0.2 1,214,751 + -1.1 1,214,752 - -2.3 1,214,773 + +1.6 1,214,774 - -0.7 1,214,788 + +0.6 1,214,788 + +0.1 1,214,789 - +0.1 1,214,789 - -2.7 1,214,886 + +0.1 1,214,887 - -0.7 1,214,899 + -1.7 1,214,900 - -0.3 1,214,931 - -3.4 1,215,153 - +2.1 1,215,167 + +2.1 1,215,168 - +1.7 1,215,287 - -0.2 1,215,367 + SMa2151 0.20 +0.1 1,215,367 + SMa2151 0.20 +3.8 1,215,367 + SMa2151 0.20 +1.9 1,215,368 - SMa2151 0.21 +1.4 1,215,368 - SMa2151 0.21 +4.2 1,215,368 - SMa2151 0.21 +0.3 1,215,622 + -2.2 1,215,675 - -2.0 1,215,734 - +1.1 1,215,736 + +1.4 1,215,737 - +2.4 1,215,737 - +0.8 1,215,884 + -3.1 1,215,907 - -1.0 1,216,034 + -0.6 1,216,035 - +0.1 1,216,036 + +0.1 1,216,036 + -2.3 1,216,037 - +1.9 1,216,037 - +1.1 1,216,037 - -2.3 1,216,117 - -0.5 1,216,148 + -0.9 1,216,149 - +0.7 1,216,208 + -0.2 1,216,208 + -1.9 1,216,236 - +1.1 1,216,236 - +0.6 1,216,366 + +2.7 1,216,366 + +0.0 1,216,366 + +0.8 1,216,367 - -0.9 1,216,367 - +2.8 1,216,367 - -0.0 1,216,431 + +1.0 1,216,473 + -3.4 1,216,474 - +2.9 1,216,598 + +0.4 1,216,599 - +3.1 1,216,599 - +0.1 1,216,610 + -1.8 1,216,610 + +0.1 1,216,611 - +0.6 1,216,611 - +4.3 1,216,615 + -2.6
Or see this region's nucleotide sequence