Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1454 and SMa1455 overlap by 19 nucleotides SMa1455 and SMa1456 overlap by 4 nucleotides SMa1456 and SMa1459 are separated by 107 nucleotides
SMa1454: SMa1454 - AraC family transcriptional regulator, at 801,299 to 802,342
SMa1454
SMa1455: SMa1455 - hypothetical protein, at 802,324 to 802,842
SMa1455
SMa1456: SMa1456 - hypothetical protein, at 802,839 to 803,228
SMa1456
SMa1459: SMa1459 - Dehydrogenase, malate/L-lactate family, at 803,336 to 804,340
SMa1459
Position (kb) 802
803
804 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 801.876 kb on - strand, within SMa1454 at 801.876 kb on - strand, within SMa1454 at 801.943 kb on + strand, within SMa1454 at 801.944 kb on - strand, within SMa1454 at 801.988 kb on - strand, within SMa1454 at 801.988 kb on - strand, within SMa1454 at 802.006 kb on + strand, within SMa1454 at 802.007 kb on - strand, within SMa1454 at 802.007 kb on - strand, within SMa1454 at 802.273 kb on + strand at 802.274 kb on - strand at 802.279 kb on + strand at 802.280 kb on - strand at 802.347 kb on + strand at 802.370 kb on + strand at 802.370 kb on + strand at 802.371 kb on - strand at 802.371 kb on - strand at 802.371 kb on - strand at 802.637 kb on + strand, within SMa1455 at 802.637 kb on + strand, within SMa1455 at 802.638 kb on - strand, within SMa1455 at 802.722 kb on - strand, within SMa1455 at 803.176 kb on + strand, within SMa1456 at 803.176 kb on + strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.229 kb on - strand at 803.250 kb on + strand at 803.338 kb on - strand at 803.645 kb on - strand, within SMa1459 at 803.846 kb on + strand, within SMa1459 at 803.939 kb on - strand, within SMa1459 at 803.989 kb on + strand, within SMa1459 at 803.989 kb on + strand, within SMa1459 at 803.991 kb on + strand, within SMa1459 at 803.991 kb on + strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 804.190 kb on - strand, within SMa1459 at 804.190 kb on - strand, within SMa1459 at 804.192 kb on + strand, within SMa1459 at 804.192 kb on + strand, within SMa1459
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 801,876 - SMa1454 0.55 +2.0 801,876 - SMa1454 0.55 -0.4 801,943 + SMa1454 0.62 -2.2 801,944 - SMa1454 0.62 -0.4 801,988 - SMa1454 0.66 -0.2 801,988 - SMa1454 0.66 -0.8 802,006 + SMa1454 0.68 +0.0 802,007 - SMa1454 0.68 -0.7 802,007 - SMa1454 0.68 +0.1 802,273 + -0.2 802,274 - -0.2 802,279 + +0.8 802,280 - +0.5 802,347 + +0.1 802,370 + +0.1 802,370 + -2.3 802,371 - +0.1 802,371 - +1.4 802,371 - -0.2 802,637 + SMa1455 0.60 +0.6 802,637 + SMa1455 0.60 +0.0 802,638 - SMa1455 0.61 -0.2 802,722 - SMa1455 0.77 +2.0 803,176 + SMa1456 0.86 -1.3 803,176 + SMa1456 0.86 +0.8 803,177 - SMa1456 0.87 -1.2 803,177 - SMa1456 0.87 -0.2 803,177 - SMa1456 0.87 +2.7 803,177 - SMa1456 0.87 -1.9 803,229 - -1.6 803,250 + -0.7 803,338 - +1.1 803,645 - SMa1459 0.31 +2.0 803,846 + SMa1459 0.51 -0.8 803,939 - SMa1459 0.60 +0.1 803,989 + SMa1459 0.65 -1.0 803,989 + SMa1459 0.65 -0.8 803,991 + SMa1459 0.65 +1.4 803,991 + SMa1459 0.65 +0.3 803,992 - SMa1459 0.65 +0.3 803,992 - SMa1459 0.65 +0.9 803,992 - SMa1459 0.65 +4.3 804,190 - SMa1459 0.85 -1.7 804,190 - SMa1459 0.85 +3.1 804,192 + SMa1459 0.85 +0.2 804,192 + SMa1459 0.85 -0.7
Or see this region's nucleotide sequence