Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1337 and SMa1339 are separated by 142 nucleotides SMa1339 and SMa1341 are separated by 1 nucleotides
SMa1337: SMa1337 - ABC transporter substrate-binding protein, at 731,337 to 732,644
SMa1337
SMa1339: SMa1339 - ABC transporter permease, at 732,787 to 733,692
SMa1339
SMa1341: SMa1341 - ABC transporter permease, at 733,694 to 734,653
SMa1341
Position (kb) 732
733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 731.829 kb on + strand, within SMa1337 at 731.829 kb on + strand, within SMa1337 at 731.830 kb on - strand, within SMa1337 at 731.830 kb on - strand, within SMa1337 at 731.830 kb on - strand, within SMa1337 at 731.830 kb on - strand, within SMa1337 at 731.928 kb on + strand, within SMa1337 at 732.006 kb on + strand, within SMa1337 at 732.007 kb on - strand, within SMa1337 at 732.016 kb on - strand, within SMa1337 at 732.016 kb on - strand, within SMa1337 at 732.089 kb on + strand, within SMa1337 at 732.171 kb on + strand at 732.171 kb on + strand, within SMa1337 at 732.172 kb on - strand, within SMa1337 at 732.172 kb on - strand, within SMa1337 at 732.227 kb on - strand, within SMa1337 at 732.271 kb on - strand, within SMa1337 at 732.310 kb on - strand, within SMa1337 at 732.396 kb on + strand, within SMa1337 at 732.450 kb on + strand, within SMa1337 at 732.451 kb on - strand, within SMa1337 at 732.466 kb on - strand, within SMa1337 at 732.466 kb on - strand, within SMa1337 at 732.546 kb on + strand at 732.546 kb on + strand at 732.546 kb on + strand at 732.547 kb on - strand at 732.552 kb on + strand at 732.631 kb on - strand at 732.648 kb on + strand at 733.001 kb on - strand, within SMa1339 at 733.057 kb on + strand, within SMa1339 at 733.213 kb on + strand, within SMa1339 at 733.213 kb on + strand, within SMa1339 at 733.294 kb on + strand, within SMa1339 at 733.294 kb on + strand, within SMa1339 at 733.294 kb on + strand, within SMa1339 at 733.295 kb on - strand, within SMa1339 at 733.295 kb on - strand, within SMa1339 at 733.385 kb on - strand, within SMa1339 at 733.421 kb on - strand, within SMa1339 at 733.421 kb on - strand, within SMa1339 at 733.421 kb on - strand, within SMa1339 at 733.519 kb on + strand, within SMa1339 at 733.520 kb on - strand, within SMa1339 at 733.618 kb on + strand at 733.618 kb on + strand at 733.619 kb on - strand at 733.619 kb on - strand at 733.619 kb on - strand at 733.622 kb on + strand at 733.623 kb on - strand at 733.623 kb on - strand at 733.623 kb on - strand at 733.658 kb on - strand at 733.666 kb on + strand at 733.667 kb on - strand at 733.788 kb on - strand at 733.849 kb on + strand, within SMa1341 at 733.931 kb on + strand, within SMa1341 at 734.065 kb on + strand, within SMa1341 at 734.102 kb on + strand, within SMa1341 at 734.157 kb on + strand, within SMa1341 at 734.197 kb on + strand, within SMa1341 at 734.198 kb on - strand, within SMa1341 at 734.198 kb on - strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.249 kb on - strand, within SMa1341 at 734.250 kb on + strand, within SMa1341 at 734.259 kb on - strand, within SMa1341 at 734.259 kb on - strand, within SMa1341 at 734.274 kb on + strand, within SMa1341 at 734.275 kb on - strand, within SMa1341 at 734.275 kb on - strand, within SMa1341 at 734.327 kb on + strand, within SMa1341 at 734.328 kb on - strand, within SMa1341 at 734.328 kb on - strand, within SMa1341 at 734.437 kb on + strand, within SMa1341 at 734.438 kb on - strand, within SMa1341 at 734.677 kb on + strand at 734.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 731,829 + SMa1337 0.38 -1.8 731,829 + SMa1337 0.38 +0.9 731,830 - SMa1337 0.38 -2.6 731,830 - SMa1337 0.38 -1.2 731,830 - SMa1337 0.38 +0.4 731,830 - SMa1337 0.38 -0.5 731,928 + SMa1337 0.45 -2.7 732,006 + SMa1337 0.51 -0.3 732,007 - SMa1337 0.51 +0.6 732,016 - SMa1337 0.52 -1.1 732,016 - SMa1337 0.52 +2.3 732,089 + SMa1337 0.57 -0.3 732,171 + +1.1 732,171 + SMa1337 0.64 +0.9 732,172 - SMa1337 0.64 -0.4 732,172 - SMa1337 0.64 -0.2 732,227 - SMa1337 0.68 -0.9 732,271 - SMa1337 0.71 +0.4 732,310 - SMa1337 0.74 +0.7 732,396 + SMa1337 0.81 -1.5 732,450 + SMa1337 0.85 +3.4 732,451 - SMa1337 0.85 +0.5 732,466 - SMa1337 0.86 -0.2 732,466 - SMa1337 0.86 -0.2 732,546 + -0.2 732,546 + +0.9 732,546 + -0.0 732,547 - +1.1 732,552 + -2.9 732,631 - -0.5 732,648 + +0.1 733,001 - SMa1339 0.24 -0.8 733,057 + SMa1339 0.30 -0.0 733,213 + SMa1339 0.47 -0.1 733,213 + SMa1339 0.47 -0.0 733,294 + SMa1339 0.56 -0.5 733,294 + SMa1339 0.56 +0.2 733,294 + SMa1339 0.56 -0.8 733,295 - SMa1339 0.56 +1.0 733,295 - SMa1339 0.56 +0.1 733,385 - SMa1339 0.66 -0.3 733,421 - SMa1339 0.70 -0.6 733,421 - SMa1339 0.70 -0.7 733,421 - SMa1339 0.70 -0.4 733,519 + SMa1339 0.81 -1.5 733,520 - SMa1339 0.81 -2.4 733,618 + +0.5 733,618 + -3.1 733,619 - -0.1 733,619 - +0.3 733,619 - -3.5 733,622 + +0.8 733,623 - +0.1 733,623 - -0.3 733,623 - +0.7 733,658 - -0.1 733,666 + +0.5 733,667 - -0.5 733,788 - +0.4 733,849 + SMa1341 0.16 -0.5 733,931 + SMa1341 0.25 +0.7 734,065 + SMa1341 0.39 -0.2 734,102 + SMa1341 0.42 -1.5 734,157 + SMa1341 0.48 -0.6 734,197 + SMa1341 0.52 +0.1 734,198 - SMa1341 0.53 -1.4 734,198 - SMa1341 0.53 -0.3 734,248 + SMa1341 0.58 -0.9 734,248 + SMa1341 0.58 -0.3 734,248 + SMa1341 0.58 +2.7 734,249 - SMa1341 0.58 -1.7 734,250 + SMa1341 0.58 +0.5 734,259 - SMa1341 0.59 -0.5 734,259 - SMa1341 0.59 +1.1 734,274 + SMa1341 0.60 -0.2 734,275 - SMa1341 0.61 -0.5 734,275 - SMa1341 0.61 -0.5 734,327 + SMa1341 0.66 +0.5 734,328 - SMa1341 0.66 -2.4 734,328 - SMa1341 0.66 -0.1 734,437 + SMa1341 0.77 +1.6 734,438 - SMa1341 0.78 -0.4 734,677 + +1.1 734,678 - -0.7
Or see this region's nucleotide sequence