Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1132 and SMa1134 are separated by 47 nucleotides SMa1134 and SMa1136 are separated by 295 nucleotides SMa1136 and SMa1138 are separated by 51 nucleotides SMa1138 and SMa1139 overlap by 7 nucleotides SMa1139 and SMa1141 are separated by 128 nucleotides
SMa1132: SMa1132 - hypothetical protein, at 618,493 to 618,882
SMa1132
SMa1134: SMa1134 - hypothetical protein, at 618,930 to 619,556
SMa1134
SMa1136: SMa1136 - hypothetical protein, at 619,852 to 620,313
SMa1136
SMa1138: SMa1138 - hypothetical protein, at 620,365 to 620,856
SMa1138
SMa1139: SMa1139 - hypothetical protein, at 620,850 to 621,116
SMa1139
SMa1141: SMa1141 - FNR/CRP family transcriptional regulator, at 621,245 to 622,009
SMa1141
Position (kb) 619
620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 618.856 kb on + strand at 618.856 kb on + strand at 618.857 kb on - strand at 618.857 kb on - strand at 618.880 kb on + strand at 618.881 kb on - strand at 619.073 kb on - strand, within SMa1134 at 619.073 kb on - strand, within SMa1134 at 619.075 kb on + strand, within SMa1134 at 619.076 kb on - strand, within SMa1134 at 619.230 kb on + strand, within SMa1134 at 619.409 kb on + strand, within SMa1134 at 619.409 kb on + strand, within SMa1134 at 619.465 kb on + strand, within SMa1134 at 619.465 kb on + strand, within SMa1134 at 619.465 kb on + strand, within SMa1134 at 619.465 kb on + strand, within SMa1134 at 619.465 kb on + strand, within SMa1134 at 619.466 kb on - strand, within SMa1134 at 619.466 kb on - strand, within SMa1134 at 619.466 kb on - strand, within SMa1134 at 619.466 kb on - strand, within SMa1134 at 619.466 kb on - strand, within SMa1134 at 619.466 kb on - strand, within SMa1134 at 619.470 kb on + strand, within SMa1134 at 619.471 kb on - strand, within SMa1134 at 619.485 kb on + strand, within SMa1134 at 619.485 kb on + strand, within SMa1134 at 619.485 kb on + strand, within SMa1134 at 619.485 kb on + strand, within SMa1134 at 619.486 kb on - strand, within SMa1134 at 619.486 kb on - strand, within SMa1134 at 619.486 kb on - strand, within SMa1134 at 619.486 kb on - strand, within SMa1134 at 619.486 kb on - strand, within SMa1134 at 620.024 kb on + strand, within SMa1136 at 620.050 kb on + strand, within SMa1136 at 620.051 kb on - strand, within SMa1136 at 620.115 kb on - strand, within SMa1136 at 620.130 kb on + strand, within SMa1136 at 620.131 kb on - strand, within SMa1136 at 620.294 kb on + strand at 620.305 kb on + strand at 620.317 kb on - strand at 620.590 kb on - strand, within SMa1138 at 620.653 kb on + strand, within SMa1138 at 620.654 kb on - strand, within SMa1138 at 620.682 kb on - strand, within SMa1138 at 620.793 kb on - strand, within SMa1138 at 620.793 kb on - strand, within SMa1138 at 620.867 kb on - strand at 620.901 kb on + strand, within SMa1139 at 621.153 kb on + strand at 621.153 kb on + strand at 621.153 kb on + strand at 621.158 kb on + strand at 621.159 kb on - strand at 621.163 kb on + strand at 621.164 kb on - strand at 621.262 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 618,856 + -2.9 618,856 + +0.2 618,857 - +0.6 618,857 - +1.7 618,880 + +0.5 618,881 - -1.0 619,073 - SMa1134 0.23 +0.6 619,073 - SMa1134 0.23 +1.3 619,075 + SMa1134 0.23 +0.1 619,076 - SMa1134 0.23 +0.6 619,230 + SMa1134 0.48 +1.0 619,409 + SMa1134 0.76 +0.1 619,409 + SMa1134 0.76 -2.0 619,465 + SMa1134 0.85 +1.2 619,465 + SMa1134 0.85 -1.3 619,465 + SMa1134 0.85 -1.3 619,465 + SMa1134 0.85 +0.6 619,465 + SMa1134 0.85 +0.9 619,466 - SMa1134 0.85 +0.2 619,466 - SMa1134 0.85 -0.5 619,466 - SMa1134 0.85 -2.3 619,466 - SMa1134 0.85 -2.3 619,466 - SMa1134 0.85 +0.0 619,466 - SMa1134 0.85 -0.2 619,470 + SMa1134 0.86 -0.3 619,471 - SMa1134 0.86 -2.7 619,485 + SMa1134 0.89 -2.4 619,485 + SMa1134 0.89 +0.8 619,485 + SMa1134 0.89 +0.8 619,485 + SMa1134 0.89 +0.3 619,486 - SMa1134 0.89 -2.1 619,486 - SMa1134 0.89 +0.9 619,486 - SMa1134 0.89 +1.0 619,486 - SMa1134 0.89 -0.8 619,486 - SMa1134 0.89 -0.2 620,024 + SMa1136 0.37 +2.8 620,050 + SMa1136 0.43 +1.5 620,051 - SMa1136 0.43 -0.7 620,115 - SMa1136 0.57 +2.3 620,130 + SMa1136 0.60 +0.4 620,131 - SMa1136 0.60 -2.8 620,294 + +0.2 620,305 + +2.0 620,317 - -0.1 620,590 - SMa1138 0.46 +2.1 620,653 + SMa1138 0.59 -0.2 620,654 - SMa1138 0.59 -1.0 620,682 - SMa1138 0.64 +1.4 620,793 - SMa1138 0.87 -0.4 620,793 - SMa1138 0.87 -0.8 620,867 - -2.3 620,901 + SMa1139 0.19 -0.4 621,153 + -1.6 621,153 + +1.8 621,153 + -0.0 621,158 + -1.9 621,159 - -2.5 621,163 + +0.4 621,164 - -1.3 621,262 + -1.2
Or see this region's nucleotide sequence