Strain Fitness in Sinorhizobium meliloti 1021 around SMa1132

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1131 and SMa1132 are separated by 428 nucleotidesSMa1132 and SMa1134 are separated by 47 nucleotidesSMa1134 and SMa1136 are separated by 295 nucleotides SMa1131: SMa1131 - Metallo-beta-lactamase superfamily protein, at 616,469 to 618,064 SMa1131 SMa1132: SMa1132 - hypothetical protein, at 618,493 to 618,882 SMa1132 SMa1134: SMa1134 - hypothetical protein, at 618,930 to 619,556 SMa1134 SMa1136: SMa1136 - hypothetical protein, at 619,852 to 620,313 SMa1136 Position (kb) 618 619Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 617.821 kb on - strand, within SMa1131at 617.923 kb on - strandat 618.082 kb on - strandat 618.082 kb on - strandat 618.096 kb on + strandat 618.097 kb on - strandat 618.097 kb on - strandat 618.097 kb on - strandat 618.097 kb on - strandat 618.097 kb on - strandat 618.153 kb on + strandat 618.262 kb on + strandat 618.263 kb on - strandat 618.407 kb on - strandat 618.633 kb on - strand, within SMa1132at 618.698 kb on + strand, within SMa1132at 618.699 kb on - strand, within SMa1132at 618.699 kb on - strand, within SMa1132at 618.772 kb on + strand, within SMa1132at 618.773 kb on - strand, within SMa1132at 618.773 kb on - strand, within SMa1132at 618.773 kb on - strand, within SMa1132at 618.775 kb on - strand, within SMa1132at 618.856 kb on + strandat 618.856 kb on + strandat 618.857 kb on - strandat 618.857 kb on - strandat 618.880 kb on + strandat 618.881 kb on - strandat 619.073 kb on - strand, within SMa1134at 619.073 kb on - strand, within SMa1134at 619.075 kb on + strand, within SMa1134at 619.076 kb on - strand, within SMa1134at 619.230 kb on + strand, within SMa1134at 619.409 kb on + strand, within SMa1134at 619.409 kb on + strand, within SMa1134at 619.465 kb on + strand, within SMa1134at 619.465 kb on + strand, within SMa1134at 619.465 kb on + strand, within SMa1134at 619.465 kb on + strand, within SMa1134at 619.465 kb on + strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.470 kb on + strand, within SMa1134at 619.471 kb on - strand, within SMa1134at 619.485 kb on + strand, within SMa1134at 619.485 kb on + strand, within SMa1134at 619.485 kb on + strand, within SMa1134at 619.485 kb on + strand, within SMa1134at 619.486 kb on - strand, within SMa1134at 619.486 kb on - strand, within SMa1134at 619.486 kb on - strand, within SMa1134at 619.486 kb on - strand, within SMa1134at 619.486 kb on - strand, within SMa1134

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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617,821 - SMa1131 0.85 +0.5
617,923 - -0.9
618,082 - +1.0
618,082 - -2.2
618,096 + -1.7
618,097 - +0.2
618,097 - -0.7
618,097 - -0.3
618,097 - +0.7
618,097 - +1.6
618,153 + -1.5
618,262 + +2.0
618,263 - +0.0
618,407 - +0.2
618,633 - SMa1132 0.36 -0.4
618,698 + SMa1132 0.53 -1.0
618,699 - SMa1132 0.53 +1.3
618,699 - SMa1132 0.53 +0.9
618,772 + SMa1132 0.72 +2.5
618,773 - SMa1132 0.72 -2.5
618,773 - SMa1132 0.72 +1.5
618,773 - SMa1132 0.72 +0.5
618,775 - SMa1132 0.72 +0.9
618,856 + -2.9
618,856 + +0.2
618,857 - +0.6
618,857 - +1.7
618,880 + +0.5
618,881 - -1.0
619,073 - SMa1134 0.23 +0.6
619,073 - SMa1134 0.23 +1.3
619,075 + SMa1134 0.23 +0.1
619,076 - SMa1134 0.23 +0.6
619,230 + SMa1134 0.48 +1.0
619,409 + SMa1134 0.76 +0.1
619,409 + SMa1134 0.76 -2.0
619,465 + SMa1134 0.85 +1.2
619,465 + SMa1134 0.85 -1.3
619,465 + SMa1134 0.85 -1.3
619,465 + SMa1134 0.85 +0.6
619,465 + SMa1134 0.85 +0.9
619,466 - SMa1134 0.85 +0.2
619,466 - SMa1134 0.85 -0.5
619,466 - SMa1134 0.85 -2.3
619,466 - SMa1134 0.85 -2.3
619,466 - SMa1134 0.85 +0.0
619,466 - SMa1134 0.85 -0.2
619,470 + SMa1134 0.86 -0.3
619,471 - SMa1134 0.86 -2.7
619,485 + SMa1134 0.89 -2.4
619,485 + SMa1134 0.89 +0.8
619,485 + SMa1134 0.89 +0.8
619,485 + SMa1134 0.89 +0.3
619,486 - SMa1134 0.89 -2.1
619,486 - SMa1134 0.89 +0.9
619,486 - SMa1134 0.89 +1.0
619,486 - SMa1134 0.89 -0.8
619,486 - SMa1134 0.89 -0.2

Or see this region's nucleotide sequence