Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0876 and SMa0878 are separated by 57 nucleotides SMa0878 and SMa0882 are separated by 673 nucleotides
SMa0876: SMa0876 - NolF secretion protein, at 488,862 to 489,965
SMa0876
SMa0878: SMa0878 - glucosamine--fructose-6-phosphate aminotransferase, at 490,023 to 491,849
SMa0878
SMa0882: SMa0882 - hypothetical protein, at 492,523 to 493,113
SMa0882
Position (kb) 490
491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 489.105 kb on + strand, within SMa0876 at 489.106 kb on - strand, within SMa0876 at 489.252 kb on + strand, within SMa0876 at 489.264 kb on + strand, within SMa0876 at 489.483 kb on + strand, within SMa0876 at 489.484 kb on - strand, within SMa0876 at 489.718 kb on - strand, within SMa0876 at 489.718 kb on - strand, within SMa0876 at 489.755 kb on + strand, within SMa0876 at 489.755 kb on + strand at 489.755 kb on + strand, within SMa0876 at 489.756 kb on - strand, within SMa0876 at 489.756 kb on - strand, within SMa0876 at 489.774 kb on + strand, within SMa0876 at 489.786 kb on + strand, within SMa0876 at 489.788 kb on + strand, within SMa0876 at 489.789 kb on - strand, within SMa0876 at 489.858 kb on - strand at 489.957 kb on + strand at 489.975 kb on + strand at 489.976 kb on - strand at 490.008 kb on - strand at 490.008 kb on - strand at 490.092 kb on - strand at 490.097 kb on - strand at 490.380 kb on - strand, within SMa0878 at 490.382 kb on - strand, within SMa0878 at 490.382 kb on - strand, within SMa0878 at 490.382 kb on - strand, within SMa0878 at 491.831 kb on + strand at 491.868 kb on + strand at 491.869 kb on - strand at 491.869 kb on - strand at 491.880 kb on + strand at 491.880 kb on + strand at 491.881 kb on - strand at 491.925 kb on - strand at 491.958 kb on - strand at 491.958 kb on - strand at 491.965 kb on + strand at 491.966 kb on - strand at 491.987 kb on + strand at 492.012 kb on + strand at 492.028 kb on + strand at 492.132 kb on + strand at 492.160 kb on + strand at 492.280 kb on - strand at 492.280 kb on - strand at 492.344 kb on + strand at 492.345 kb on - strand at 492.345 kb on - strand at 492.357 kb on + strand at 492.363 kb on + strand at 492.415 kb on + strand at 492.538 kb on + strand at 492.538 kb on + strand at 492.545 kb on - strand at 492.819 kb on - strand, within SMa0882
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 489,105 + SMa0876 0.22 -2.0 489,106 - SMa0876 0.22 +1.3 489,252 + SMa0876 0.35 +0.4 489,264 + SMa0876 0.36 +0.8 489,483 + SMa0876 0.56 +3.0 489,484 - SMa0876 0.56 +1.9 489,718 - SMa0876 0.78 +3.0 489,718 - SMa0876 0.78 +0.6 489,755 + SMa0876 0.81 +0.8 489,755 + +1.0 489,755 + SMa0876 0.81 -2.8 489,756 - SMa0876 0.81 +1.4 489,756 - SMa0876 0.81 -0.1 489,774 + SMa0876 0.83 +1.7 489,786 + SMa0876 0.84 +0.6 489,788 + SMa0876 0.84 -2.1 489,789 - SMa0876 0.84 -0.4 489,858 - +1.0 489,957 + -0.1 489,975 + -0.3 489,976 - -1.1 490,008 - -3.6 490,008 - -0.2 490,092 - -0.3 490,097 - -1.6 490,380 - SMa0878 0.20 +0.7 490,382 - SMa0878 0.20 +2.1 490,382 - SMa0878 0.20 +1.4 490,382 - SMa0878 0.20 -2.6 491,831 + -3.4 491,868 + -0.1 491,869 - +0.1 491,869 - +1.2 491,880 + +1.5 491,880 + +1.0 491,881 - +1.3 491,925 - +0.8 491,958 - +3.1 491,958 - -0.9 491,965 + -2.2 491,966 - +0.4 491,987 + -1.0 492,012 + -2.0 492,028 + +1.8 492,132 + +0.8 492,160 + -0.0 492,280 - -0.4 492,280 - -0.1 492,344 + +0.3 492,345 - -0.4 492,345 - -0.3 492,357 + -0.6 492,363 + -1.8 492,415 + -1.7 492,538 + +2.5 492,538 + -2.3 492,545 - -0.8 492,819 - SMa0882 0.50 +4.2
Or see this region's nucleotide sequence