Strain Fitness in Sinorhizobium meliloti 1021 around SMa0389

Experiment: Aluminum chloride

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa0387 and SMa0389 are separated by 130 nucleotidesSMa0389 and SMa0391 are separated by 305 nucleotides SMa0387: SMa0387 - histidinol-phosphate aminotransferase, at 209,020 to 210,132 SMa0387 SMa0389: SMa0389 - short chain alcohol dehydrogenase-related dehydrogenase, at 210,263 to 211,030 SMa0389 SMa0391: SMa0391 - ABC transporter ATP-binding protein, at 211,336 to 212,469 SMa0391 Position (kb) 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.307 kb on + strand, within SMa0387at 209.307 kb on + strand, within SMa0387at 209.308 kb on - strand, within SMa0387at 209.332 kb on + strand, within SMa0387at 209.409 kb on + strand, within SMa0387at 209.409 kb on + strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.461 kb on + strand, within SMa0387at 209.461 kb on + strand, within SMa0387at 209.513 kb on + strand, within SMa0387at 209.531 kb on + strand, within SMa0387at 209.532 kb on - strand, within SMa0387at 209.540 kb on + strand, within SMa0387at 209.655 kb on + strand, within SMa0387at 209.655 kb on + strand, within SMa0387at 209.754 kb on + strand, within SMa0387at 209.756 kb on + strandat 209.757 kb on - strand, within SMa0387at 209.783 kb on + strand, within SMa0387at 209.783 kb on + strand, within SMa0387at 209.783 kb on + strand, within SMa0387at 209.784 kb on - strand, within SMa0387at 209.784 kb on - strand, within SMa0387at 209.784 kb on - strand, within SMa0387at 210.041 kb on + strandat 210.078 kb on + strandat 210.078 kb on + strandat 210.079 kb on - strandat 210.080 kb on + strandat 210.081 kb on - strandat 210.081 kb on - strandat 210.167 kb on + strandat 210.173 kb on + strandat 210.195 kb on - strandat 210.197 kb on - strandat 210.197 kb on - strandat 210.197 kb on - strandat 210.198 kb on + strandat 210.198 kb on + strandat 210.198 kb on + strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.203 kb on - strandat 210.205 kb on - strandat 210.221 kb on + strandat 210.222 kb on - strandat 210.222 kb on - strandat 210.327 kb on + strandat 210.338 kb on - strandat 210.394 kb on - strand, within SMa0389at 210.394 kb on - strand, within SMa0389at 210.580 kb on - strand, within SMa0389at 210.598 kb on + strand, within SMa0389at 210.598 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.863 kb on + strandat 210.864 kb on - strand, within SMa0389at 210.864 kb on - strand, within SMa0389at 210.864 kb on - strand, within SMa0389at 210.977 kb on + strandat 210.980 kb on - strandat 210.980 kb on - strandat 210.994 kb on + strandat 210.994 kb on + strandat 210.995 kb on - strandat 210.995 kb on - strandat 210.995 kb on - strandat 210.995 kb on - strandat 211.014 kb on - strandat 211.222 kb on + strandat 211.223 kb on - strandat 211.225 kb on + strandat 211.226 kb on - strandat 211.232 kb on + strandat 211.232 kb on + strandat 211.232 kb on + strandat 211.233 kb on - strandat 211.233 kb on - strandat 211.235 kb on - strandat 211.249 kb on - strandat 211.288 kb on + strandat 211.335 kb on + strandat 211.335 kb on + strandat 211.336 kb on - strandat 211.614 kb on + strand, within SMa0391at 211.615 kb on - strand, within SMa0391at 211.729 kb on + strand, within SMa0391at 211.729 kb on + strand, within SMa0391

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
remove
209,303 + SMa0387 0.25 -0.9
209,303 + SMa0387 0.25 -1.4
209,303 + SMa0387 0.25 -0.1
209,303 + SMa0387 0.25 +0.4
209,303 + SMa0387 0.25 +1.1
209,303 + SMa0387 0.25 +0.2
209,303 + SMa0387 0.25 -0.9
209,307 + SMa0387 0.26 -1.4
209,307 + SMa0387 0.26 +0.8
209,308 - SMa0387 0.26 +0.2
209,332 + SMa0387 0.28 +0.6
209,409 + SMa0387 0.35 +0.7
209,409 + SMa0387 0.35 -1.2
209,410 - SMa0387 0.35 +0.0
209,410 - SMa0387 0.35 -0.1
209,410 - SMa0387 0.35 +2.1
209,410 - SMa0387 0.35 +0.7
209,410 - SMa0387 0.35 -0.1
209,461 + SMa0387 0.40 -0.1
209,461 + SMa0387 0.40 +0.2
209,513 + SMa0387 0.44 +0.7
209,531 + SMa0387 0.46 -2.4
209,532 - SMa0387 0.46 +0.7
209,540 + SMa0387 0.47 +0.9
209,655 + SMa0387 0.57 +0.1
209,655 + SMa0387 0.57 -1.1
209,754 + SMa0387 0.66 -0.2
209,756 + +1.1
209,757 - SMa0387 0.66 +0.5
209,783 + SMa0387 0.69 -0.2
209,783 + SMa0387 0.69 -0.6
209,783 + SMa0387 0.69 +0.4
209,784 - SMa0387 0.69 +1.1
209,784 - SMa0387 0.69 -1.7
209,784 - SMa0387 0.69 +0.2
210,041 + +0.3
210,078 + -1.7
210,078 + -1.7
210,079 - +0.0
210,080 + +0.1
210,081 - -0.0
210,081 - +0.1
210,167 + +0.1
210,173 + -0.7
210,195 - -0.4
210,197 - -0.2
210,197 - +2.0
210,197 - -0.1
210,198 + +0.3
210,198 + -0.9
210,198 + +1.0
210,199 - -0.3
210,199 - +0.5
210,199 - -0.3
210,199 - +0.2
210,199 - -1.1
210,203 - +1.9
210,205 - +0.8
210,221 + -1.0
210,222 - -0.2
210,222 - +0.4
210,327 + -2.3
210,338 - -0.5
210,394 - SMa0389 0.17 +0.1
210,394 - SMa0389 0.17 -0.3
210,580 - SMa0389 0.41 -0.4
210,598 + SMa0389 0.44 +1.1
210,598 + SMa0389 0.44 -0.5
210,601 + SMa0389 0.44 -0.5
210,601 + SMa0389 0.44 -0.2
210,601 + SMa0389 0.44 +0.3
210,601 + SMa0389 0.44 -0.9
210,601 + SMa0389 0.44 -1.3
210,602 - SMa0389 0.44 +0.1
210,602 - SMa0389 0.44 -2.2
210,602 - SMa0389 0.44 -0.7
210,710 + SMa0389 0.58 +0.1
210,710 + SMa0389 0.58 +4.1
210,710 + SMa0389 0.58 -1.8
210,710 + SMa0389 0.58 -2.0
210,711 - SMa0389 0.58 -1.7
210,711 - SMa0389 0.58 +0.1
210,711 - SMa0389 0.58 -1.9
210,863 + +1.1
210,864 - SMa0389 0.78 -0.5
210,864 - SMa0389 0.78 -0.0
210,864 - SMa0389 0.78 +0.1
210,977 + +0.0
210,980 - +0.7
210,980 - -0.5
210,994 + -0.2
210,994 + +0.3
210,995 - -0.8
210,995 - -0.2
210,995 - +4.3
210,995 - -0.9
211,014 - -0.2
211,222 + -1.1
211,223 - +1.0
211,225 + +0.6
211,226 - +0.9
211,232 + -2.9
211,232 + -1.3
211,232 + -0.2
211,233 - +0.3
211,233 - +2.5
211,235 - -1.6
211,249 - -1.3
211,288 + -1.2
211,335 + +0.2
211,335 + +0.5
211,336 - -3.3
211,614 + SMa0391 0.25 +0.5
211,615 - SMa0391 0.25 +0.3
211,729 + SMa0391 0.35 +0.2
211,729 + SMa0391 0.35 -0.4

Or see this region's nucleotide sequence