Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0325 and SMa0326 are separated by 20 nucleotides SMa0326 and SMa0329 are separated by 72 nucleotides SMa0329 and SMa5017 are separated by 55 nucleotides SMa5017 and SMa0333 overlap by 4 nucleotides SMa0333 and SMa0335 are separated by 180 nucleotides
SMa0325: SMa0325 - hypothetical protein, at 180,910 to 181,212
SMa0325
SMa0326: SMa0326 - short chain alcohol dehydrogenase-related dehydrogenase, at 181,233 to 182,072
SMa0326
SMa0329: SMa0329 - short chain alcohol dehydrogenase-related dehydrogenase, at 182,145 to 182,906
SMa0329
SMa5017: SMa5017 - hypothetical protein, at 182,962 to 183,186
SMa5017
SMa0333: SMa0333 - hypothetical protein, at 183,183 to 183,395
SMa0333
SMa0335: SMa0335 - 3-ketoacyl-ACP reductase, at 183,576 to 184,352
SMa0335
Position (kb) 182
183 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 181.214 kb on - strand at 181.225 kb on + strand at 181.226 kb on - strand at 181.277 kb on + strand at 181.277 kb on + strand at 181.278 kb on - strand at 181.601 kb on + strand, within SMa0326 at 181.677 kb on + strand, within SMa0326 at 181.680 kb on + strand, within SMa0326 at 181.680 kb on + strand, within SMa0326 at 181.680 kb on + strand, within SMa0326 at 181.681 kb on - strand, within SMa0326 at 181.867 kb on - strand, within SMa0326 at 182.499 kb on + strand, within SMa0329 at 182.500 kb on - strand, within SMa0329 at 182.500 kb on - strand, within SMa0329 at 182.682 kb on - strand, within SMa0329 at 182.700 kb on - strand, within SMa0329 at 183.231 kb on - strand, within SMa0333 at 183.238 kb on + strand, within SMa0333 at 183.238 kb on + strand, within SMa0333 at 183.381 kb on - strand at 183.381 kb on - strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.629 kb on - strand at 183.629 kb on - strand at 183.868 kb on + strand, within SMa0335 at 183.868 kb on + strand, within SMa0335
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 181,214 - +0.2 181,225 + -0.3 181,226 - +0.8 181,277 + -0.5 181,277 + +0.9 181,278 - -2.1 181,601 + SMa0326 0.44 +3.2 181,677 + SMa0326 0.53 +1.8 181,680 + SMa0326 0.53 -0.3 181,680 + SMa0326 0.53 -0.4 181,680 + SMa0326 0.53 -0.7 181,681 - SMa0326 0.53 +1.2 181,867 - SMa0326 0.75 -1.8 182,499 + SMa0329 0.46 +0.2 182,500 - SMa0329 0.47 +0.8 182,500 - SMa0329 0.47 +1.7 182,682 - SMa0329 0.70 +1.3 182,700 - SMa0329 0.73 +0.3 183,231 - SMa0333 0.23 -2.2 183,238 + SMa0333 0.26 +0.0 183,238 + SMa0333 0.26 -0.5 183,381 - -0.8 183,381 - +1.2 183,628 + +2.5 183,628 + +0.2 183,628 + +1.2 183,628 + +0.9 183,628 + +0.0 183,629 - +0.7 183,629 - -0.2 183,868 + SMa0335 0.38 +0.6 183,868 + SMa0335 0.38 +0.0
Or see this region's nucleotide sequence