Strain Fitness in Sinorhizobium meliloti 1021 around SMa0169

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0166 and SMa0168 are separated by 83 nucleotidesSMa0168 and SMa0169 are separated by 60 nucleotidesSMa0169 and SMa0171 are separated by 180 nucleotides SMa0166: SMa0166 - hypothetical protein, at 91,039 to 91,569 SMa0166 SMa0168: SMa0168 - hypothetical protein, at 91,653 to 92,465 SMa0168 SMa0169: SMa0169 - methyltransferase, at 92,526 to 93,311 SMa0169 SMa0171: SMa0171 - hypothetical protein, at 93,492 to 94,256 SMa0171 Position (kb) 92 93 94Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 91.659 kb on - strandat 91.723 kb on - strandat 91.723 kb on - strandat 91.796 kb on + strand, within SMa0168at 92.166 kb on - strand, within SMa0168at 92.166 kb on - strand, within SMa0168at 92.202 kb on + strand, within SMa0168at 92.275 kb on + strand, within SMa0168at 92.276 kb on - strand, within SMa0168at 92.319 kb on + strand, within SMa0168at 92.320 kb on - strand, within SMa0168at 92.320 kb on - strand, within SMa0168at 92.320 kb on - strand, within SMa0168at 92.328 kb on + strand, within SMa0168at 92.329 kb on - strand, within SMa0168at 92.446 kb on - strandat 92.499 kb on - strandat 92.525 kb on + strandat 92.961 kb on - strand, within SMa0169at 93.068 kb on + strand, within SMa0169at 93.108 kb on + strand, within SMa0169at 93.109 kb on - strand, within SMa0169at 93.154 kb on - strand, within SMa0169at 93.154 kb on - strand, within SMa0169at 93.236 kb on + strandat 93.236 kb on + strandat 93.353 kb on + strandat 93.353 kb on + strandat 93.353 kb on + strandat 93.373 kb on + strandat 93.374 kb on - strandat 93.374 kb on - strandat 93.386 kb on + strandat 93.386 kb on + strandat 93.387 kb on - strandat 93.387 kb on - strandat 93.410 kb on - strandat 93.534 kb on + strandat 93.534 kb on + strandat 93.534 kb on + strandat 93.535 kb on - strandat 93.535 kb on - strandat 93.622 kb on + strand, within SMa0171at 93.710 kb on - strand, within SMa0171at 93.712 kb on + strand, within SMa0171at 93.712 kb on + strand, within SMa0171at 93.713 kb on - strand, within SMa0171at 93.713 kb on - strand, within SMa0171at 93.742 kb on + strand, within SMa0171at 93.888 kb on + strand, within SMa0171at 93.889 kb on - strand, within SMa0171at 94.181 kb on - strandat 94.181 kb on - strandat 94.190 kb on + strandat 94.221 kb on + strandat 94.259 kb on + strandat 94.259 kb on + strandat 94.260 kb on - strandat 94.301 kb on + strandat 94.304 kb on + strandat 94.304 kb on + strandat 94.305 kb on - strandat 94.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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91,659 - -0.4
91,723 - +0.2
91,723 - -0.0
91,796 + SMa0168 0.18 +0.9
92,166 - SMa0168 0.63 -3.3
92,166 - SMa0168 0.63 -0.1
92,202 + SMa0168 0.68 -0.7
92,275 + SMa0168 0.77 -0.7
92,276 - SMa0168 0.77 +0.1
92,319 + SMa0168 0.82 +0.2
92,320 - SMa0168 0.82 -1.4
92,320 - SMa0168 0.82 -0.6
92,320 - SMa0168 0.82 +0.9
92,328 + SMa0168 0.83 -0.2
92,329 - SMa0168 0.83 +2.2
92,446 - +0.4
92,499 - +0.4
92,525 + -0.1
92,961 - SMa0169 0.55 -0.0
93,068 + SMa0169 0.69 +1.5
93,108 + SMa0169 0.74 +2.2
93,109 - SMa0169 0.74 +0.5
93,154 - SMa0169 0.80 +1.8
93,154 - SMa0169 0.80 +0.7
93,236 + +1.2
93,236 + +1.2
93,353 + +0.7
93,353 + -0.5
93,353 + +0.6
93,373 + +0.1
93,374 - -0.5
93,374 - -0.4
93,386 + -1.8
93,386 + +2.3
93,387 - +3.5
93,387 - +2.4
93,410 - -0.2
93,534 + -0.1
93,534 + +1.2
93,534 + +0.5
93,535 - -1.4
93,535 - -1.5
93,622 + SMa0171 0.17 -0.8
93,710 - SMa0171 0.28 +0.0
93,712 + SMa0171 0.29 -0.9
93,712 + SMa0171 0.29 -0.1
93,713 - SMa0171 0.29 -1.1
93,713 - SMa0171 0.29 +3.5
93,742 + SMa0171 0.33 -0.8
93,888 + SMa0171 0.52 -0.8
93,889 - SMa0171 0.52 -0.6
94,181 - -0.8
94,181 - +0.2
94,190 + -0.8
94,221 + -0.3
94,259 + -0.5
94,259 + +2.2
94,260 - +0.1
94,301 + +1.2
94,304 + +1.4
94,304 + +1.2
94,305 - +0.6
94,305 - -0.2

Or see this region's nucleotide sequence