Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21534 and SM_b21535 are separated by 15 nucleotides SM_b21535 and SM_b21536 are separated by 108 nucleotides
SM_b21534: SM_b21534 - dehydrogenase, at 1,060,537 to 1,063,014
_b21534
SM_b21535: SM_b21535 - LysR family transcriptional regulator, at 1,063,030 to 1,063,899
_b21535
SM_b21536: SM_b21536 - hypothetical protein, at 1,064,008 to 1,065,678
_b21536
Position (kb)
1063
1064 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1062.098 kb on - strand, within SM_b21534 at 1062.099 kb on + strand, within SM_b21534 at 1062.314 kb on + strand, within SM_b21534 at 1062.314 kb on + strand, within SM_b21534 at 1062.315 kb on - strand at 1062.315 kb on - strand, within SM_b21534 at 1062.392 kb on - strand, within SM_b21534 at 1062.404 kb on - strand, within SM_b21534 at 1062.421 kb on + strand, within SM_b21534 at 1062.422 kb on - strand, within SM_b21534 at 1062.422 kb on - strand, within SM_b21534 at 1062.422 kb on - strand, within SM_b21534 at 1062.422 kb on - strand, within SM_b21534 at 1062.422 kb on - strand, within SM_b21534 at 1062.509 kb on + strand, within SM_b21534 at 1062.509 kb on + strand, within SM_b21534 at 1062.510 kb on - strand, within SM_b21534 at 1062.530 kb on - strand, within SM_b21534 at 1062.532 kb on + strand, within SM_b21534 at 1062.533 kb on - strand, within SM_b21534 at 1062.955 kb on + strand at 1062.956 kb on - strand at 1062.956 kb on - strand at 1062.956 kb on - strand at 1063.198 kb on + strand, within SM_b21535 at 1063.198 kb on + strand, within SM_b21535 at 1063.372 kb on - strand, within SM_b21535 at 1063.493 kb on + strand, within SM_b21535 at 1063.493 kb on + strand, within SM_b21535 at 1063.499 kb on + strand, within SM_b21535 at 1063.499 kb on + strand, within SM_b21535 at 1063.500 kb on - strand, within SM_b21535 at 1063.500 kb on - strand, within SM_b21535 at 1063.559 kb on + strand, within SM_b21535 at 1063.559 kb on + strand, within SM_b21535 at 1063.772 kb on + strand, within SM_b21535 at 1063.772 kb on + strand, within SM_b21535 at 1063.773 kb on - strand, within SM_b21535 at 1063.773 kb on - strand, within SM_b21535 at 1064.062 kb on + strand at 1064.062 kb on + strand at 1064.063 kb on - strand at 1064.063 kb on - strand at 1064.153 kb on - strand at 1064.243 kb on - strand, within SM_b21536 at 1064.248 kb on - strand, within SM_b21536 at 1064.371 kb on + strand, within SM_b21536 at 1064.372 kb on - strand, within SM_b21536 at 1064.513 kb on - strand, within SM_b21536
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 1,062,098 - SM_b21534 0.63 -0.5 1,062,099 + SM_b21534 0.63 +0.2 1,062,314 + SM_b21534 0.72 -2.9 1,062,314 + SM_b21534 0.72 +0.4 1,062,315 - +0.1 1,062,315 - SM_b21534 0.72 -0.2 1,062,392 - SM_b21534 0.75 -0.1 1,062,404 - SM_b21534 0.75 -0.4 1,062,421 + SM_b21534 0.76 -0.4 1,062,422 - SM_b21534 0.76 -2.0 1,062,422 - SM_b21534 0.76 -0.2 1,062,422 - SM_b21534 0.76 +0.7 1,062,422 - SM_b21534 0.76 +1.5 1,062,422 - SM_b21534 0.76 -2.3 1,062,509 + SM_b21534 0.80 +0.4 1,062,509 + SM_b21534 0.80 +0.1 1,062,510 - SM_b21534 0.80 -1.2 1,062,530 - SM_b21534 0.80 +0.1 1,062,532 + SM_b21534 0.81 -1.2 1,062,533 - SM_b21534 0.81 -0.7 1,062,955 + -0.5 1,062,956 - +0.5 1,062,956 - +0.3 1,062,956 - -1.1 1,063,198 + SM_b21535 0.19 +0.3 1,063,198 + SM_b21535 0.19 +1.0 1,063,372 - SM_b21535 0.39 -0.7 1,063,493 + SM_b21535 0.53 -0.3 1,063,493 + SM_b21535 0.53 -3.6 1,063,499 + SM_b21535 0.54 -0.9 1,063,499 + SM_b21535 0.54 +0.2 1,063,500 - SM_b21535 0.54 -0.9 1,063,500 - SM_b21535 0.54 +2.1 1,063,559 + SM_b21535 0.61 -1.2 1,063,559 + SM_b21535 0.61 -1.1 1,063,772 + SM_b21535 0.85 -2.7 1,063,772 + SM_b21535 0.85 -0.2 1,063,773 - SM_b21535 0.85 +0.8 1,063,773 - SM_b21535 0.85 +0.1 1,064,062 + -1.2 1,064,062 + -0.1 1,064,063 - +1.4 1,064,063 - +0.2 1,064,153 - -0.9 1,064,243 - SM_b21536 0.14 +0.0 1,064,248 - SM_b21536 0.14 +0.2 1,064,371 + SM_b21536 0.22 -0.9 1,064,372 - SM_b21536 0.22 -0.5 1,064,513 - SM_b21536 0.30 -1.9
Or see this region's nucleotide sequence