Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21330 and SM_b21331 are separated by 231 nucleotides SM_b21331 and SM_b21332 are separated by 273 nucleotides SM_b21332 and SM_b21333 are separated by 54 nucleotides SM_b21333 and SM_b21334 are separated by 148 nucleotides
SM_b21330: SM_b21330 - hypothetical protein, at 998,537 to 998,746
_b21330
SM_b21331: SM_b21331 - hypothetical protein, at 998,978 to 999,298
_b21331
SM_b21332: SM_b21332 - hypothetical protein, at 999,572 to 1,000,069
_b21332
SM_b21333: SM_b21333 - hypothetical protein, at 1,000,124 to 1,000,483
_b21333
SM_b21334: SM_b21334 - hypothetical protein, at 1,000,632 to 1,001,393
_b21334
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 998.697 kb on + strand, within SM_b21330 at 998.698 kb on - strand, within SM_b21330 at 998.720 kb on + strand, within SM_b21330 at 998.836 kb on + strand at 998.837 kb on - strand at 998.887 kb on + strand at 998.887 kb on + strand at 998.887 kb on + strand at 998.887 kb on + strand at 998.888 kb on - strand at 998.888 kb on - strand at 998.888 kb on - strand at 999.011 kb on - strand, within SM_b21331 at 999.011 kb on - strand, within SM_b21331 at 999.248 kb on + strand, within SM_b21331 at 999.248 kb on + strand, within SM_b21331 at 999.249 kb on - strand, within SM_b21331 at 999.250 kb on + strand, within SM_b21331 at 999.344 kb on - strand at 999.344 kb on - strand at 999.500 kb on + strand at 999.501 kb on - strand at 999.627 kb on - strand, within SM_b21332 at 999.627 kb on - strand, within SM_b21332 at 999.680 kb on - strand, within SM_b21332 at 999.707 kb on + strand, within SM_b21332 at 999.708 kb on - strand, within SM_b21332 at 999.708 kb on - strand, within SM_b21332 at 999.708 kb on - strand, within SM_b21332 at 1000.141 kb on - strand at 1000.141 kb on - strand at 1000.141 kb on - strand at 1000.358 kb on + strand, within SM_b21333 at 1000.481 kb on + strand at 1000.486 kb on + strand at 1000.517 kb on - strand at 1000.546 kb on + strand at 1000.546 kb on + strand at 1000.547 kb on - strand at 1000.646 kb on + strand at 1000.667 kb on - strand at 1000.667 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 998,697 + SM_b21330 0.76 -1.9 998,698 - SM_b21330 0.77 +0.4 998,720 + SM_b21330 0.87 -0.3 998,836 + +0.5 998,837 - -0.2 998,887 + +2.1 998,887 + +1.1 998,887 + +1.1 998,887 + +0.3 998,888 - +1.6 998,888 - +1.1 998,888 - -0.4 999,011 - SM_b21331 0.10 -0.9 999,011 - SM_b21331 0.10 +1.1 999,248 + SM_b21331 0.84 -0.0 999,248 + SM_b21331 0.84 -0.7 999,249 - SM_b21331 0.84 -0.1 999,250 + SM_b21331 0.85 -0.5 999,344 - -2.4 999,344 - -0.2 999,500 + -0.4 999,501 - -3.3 999,627 - SM_b21332 0.11 -1.1 999,627 - SM_b21332 0.11 -1.3 999,680 - SM_b21332 0.22 -0.5 999,707 + SM_b21332 0.27 -1.3 999,708 - SM_b21332 0.27 -0.6 999,708 - SM_b21332 0.27 -0.4 999,708 - SM_b21332 0.27 -3.3 1,000,141 - -0.9 1,000,141 - +0.2 1,000,141 - -1.3 1,000,358 + SM_b21333 0.65 -1.3 1,000,481 + +0.0 1,000,486 + -0.6 1,000,517 - +0.8 1,000,546 + -0.3 1,000,546 + -0.9 1,000,547 - +0.5 1,000,646 + -0.2 1,000,667 - -0.1 1,000,667 - -1.3
Or see this region's nucleotide sequence