Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20908

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20906 and SM_b20907 overlap by 8 nucleotidesSM_b20907 and SM_b20908 are separated by 224 nucleotidesSM_b20908 and SM_b21680 are separated by 30 nucleotidesSM_b21680 and SM_b21681 are separated by 94 nucleotidesSM_b21681 and SM_b20909 are separated by 111 nucleotidesSM_b20909 and SM_b20910 are separated by 58 nucleotides SM_b20906: SM_b20906 - hypothetical protein, at 1,316,960 to 1,317,265 _b20906 SM_b20907: SM_b20907 - hypothetical protein, at 1,317,258 to 1,317,563 _b20907 SM_b20908: SM_b20908 - hypothetical protein, at 1,317,788 to 1,318,126 _b20908 SM_b21680: SM_b21680 - hypothetical protein, at 1,318,157 to 1,318,312 _b21680 SM_b21681: SM_b21681 - hypothetical protein, at 1,318,407 to 1,318,583 _b21681 SM_b20909: SM_b20909 - hypothetical protein, at 1,318,695 to 1,318,988 _b20909 SM_b20910: SM_b20910 - hypothetical protein, at 1,319,047 to 1,319,355 _b20910 Position (kb) 1317 1318 1319Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1316.892 kb on + strandat 1317.017 kb on + strand, within SM_b20906at 1317.117 kb on - strand, within SM_b20906at 1317.133 kb on + strand, within SM_b20906at 1317.136 kb on + strand, within SM_b20906at 1317.186 kb on - strand, within SM_b20906at 1317.209 kb on + strand, within SM_b20906at 1317.209 kb on + strand, within SM_b20906at 1317.209 kb on + strand, within SM_b20906at 1317.210 kb on - strand, within SM_b20906at 1317.210 kb on - strand, within SM_b20906at 1317.210 kb on - strand, within SM_b20906at 1317.211 kb on + strand, within SM_b20906at 1317.211 kb on + strand, within SM_b20906at 1317.212 kb on - strand, within SM_b20906at 1317.264 kb on - strandat 1317.264 kb on - strandat 1317.280 kb on + strandat 1317.280 kb on + strandat 1317.280 kb on + strandat 1317.281 kb on - strandat 1317.281 kb on - strandat 1317.281 kb on - strandat 1317.287 kb on + strandat 1317.310 kb on + strand, within SM_b20907at 1317.385 kb on + strand, within SM_b20907at 1317.386 kb on - strand, within SM_b20907at 1317.386 kb on - strand, within SM_b20907at 1317.386 kb on - strand, within SM_b20907at 1317.386 kb on - strand, within SM_b20907at 1317.452 kb on - strand, within SM_b20907at 1317.452 kb on - strand, within SM_b20907at 1317.488 kb on + strand, within SM_b20907at 1317.518 kb on + strand, within SM_b20907at 1317.593 kb on + strandat 1317.757 kb on + strandat 1317.758 kb on - strandat 1317.758 kb on - strandat 1317.980 kb on + strand, within SM_b20908at 1317.980 kb on + strand, within SM_b20908at 1317.980 kb on + strand, within SM_b20908at 1317.980 kb on + strand, within SM_b20908at 1317.981 kb on - strand, within SM_b20908at 1317.981 kb on - strand, within SM_b20908at 1318.002 kb on + strand, within SM_b20908at 1318.003 kb on - strand, within SM_b20908at 1318.003 kb on - strand, within SM_b20908at 1318.064 kb on + strand, within SM_b20908at 1318.065 kb on - strand, within SM_b20908at 1318.071 kb on + strand, within SM_b20908at 1318.071 kb on + strand, within SM_b20908at 1318.071 kb on + strand, within SM_b20908at 1318.071 kb on + strand, within SM_b20908at 1318.072 kb on - strand, within SM_b20908at 1318.072 kb on - strand, within SM_b20908at 1318.145 kb on + strandat 1318.178 kb on - strand, within SM_b21680at 1318.237 kb on + strand, within SM_b21680at 1318.237 kb on + strand, within SM_b21680at 1318.238 kb on - strand, within SM_b21680at 1318.238 kb on - strand, within SM_b21680at 1318.238 kb on - strand, within SM_b21680at 1318.238 kb on - strand, within SM_b21680at 1318.238 kb on - strand, within SM_b21680at 1318.239 kb on + strand, within SM_b21680at 1318.239 kb on + strand, within SM_b21680at 1318.239 kb on + strand, within SM_b21680at 1318.239 kb on + strand, within SM_b21680at 1318.240 kb on - strand, within SM_b21680at 1318.240 kb on - strand, within SM_b21680at 1318.240 kb on - strand, within SM_b21680at 1318.240 kb on - strand, within SM_b21680at 1318.240 kb on - strand, within SM_b21680at 1318.400 kb on + strandat 1318.453 kb on + strand, within SM_b21681at 1318.453 kb on + strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.454 kb on - strand, within SM_b21681at 1318.581 kb on + strandat 1318.718 kb on + strandat 1318.826 kb on + strand, within SM_b20909at 1318.827 kb on - strand, within SM_b20909at 1318.963 kb on + strandat 1318.963 kb on + strandat 1318.964 kb on - strandat 1319.022 kb on + strandat 1319.027 kb on + strandat 1319.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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1,316,892 + +1.0
1,317,017 + SM_b20906 0.19 -1.1
1,317,117 - SM_b20906 0.51 -1.8
1,317,133 + SM_b20906 0.57 -2.7
1,317,136 + SM_b20906 0.58 +0.3
1,317,186 - SM_b20906 0.74 -1.4
1,317,209 + SM_b20906 0.81 +0.1
1,317,209 + SM_b20906 0.81 -1.5
1,317,209 + SM_b20906 0.81 -0.7
1,317,210 - SM_b20906 0.82 -3.4
1,317,210 - SM_b20906 0.82 -1.1
1,317,210 - SM_b20906 0.82 +0.2
1,317,211 + SM_b20906 0.82 -1.0
1,317,211 + SM_b20906 0.82 -0.8
1,317,212 - SM_b20906 0.82 +0.5
1,317,264 - +0.0
1,317,264 - +1.0
1,317,280 + -0.3
1,317,280 + -1.2
1,317,280 + +0.6
1,317,281 - +1.0
1,317,281 - -0.0
1,317,281 - +2.6
1,317,287 + -0.3
1,317,310 + SM_b20907 0.17 -0.4
1,317,385 + SM_b20907 0.42 -2.1
1,317,386 - SM_b20907 0.42 -0.4
1,317,386 - SM_b20907 0.42 +0.5
1,317,386 - SM_b20907 0.42 +1.5
1,317,386 - SM_b20907 0.42 +1.1
1,317,452 - SM_b20907 0.63 +0.5
1,317,452 - SM_b20907 0.63 -0.1
1,317,488 + SM_b20907 0.75 -0.6
1,317,518 + SM_b20907 0.85 -2.5
1,317,593 + -0.4
1,317,757 + -2.5
1,317,758 - +2.0
1,317,758 - +1.8
1,317,980 + SM_b20908 0.57 +0.5
1,317,980 + SM_b20908 0.57 -0.3
1,317,980 + SM_b20908 0.57 -1.5
1,317,980 + SM_b20908 0.57 +0.3
1,317,981 - SM_b20908 0.57 -1.1
1,317,981 - SM_b20908 0.57 +0.6
1,318,002 + SM_b20908 0.63 +1.5
1,318,003 - SM_b20908 0.63 -0.3
1,318,003 - SM_b20908 0.63 +0.6
1,318,064 + SM_b20908 0.81 +0.2
1,318,065 - SM_b20908 0.82 +0.7
1,318,071 + SM_b20908 0.83 +0.5
1,318,071 + SM_b20908 0.83 -2.8
1,318,071 + SM_b20908 0.83 -0.3
1,318,071 + SM_b20908 0.83 -0.1
1,318,072 - SM_b20908 0.84 +1.3
1,318,072 - SM_b20908 0.84 +1.0
1,318,145 + -0.2
1,318,178 - SM_b21680 0.13 +1.0
1,318,237 + SM_b21680 0.51 -2.3
1,318,237 + SM_b21680 0.51 +0.4
1,318,238 - SM_b21680 0.52 +0.2
1,318,238 - SM_b21680 0.52 +0.3
1,318,238 - SM_b21680 0.52 +0.0
1,318,238 - SM_b21680 0.52 -1.1
1,318,238 - SM_b21680 0.52 -0.7
1,318,239 + SM_b21680 0.53 -2.0
1,318,239 + SM_b21680 0.53 -0.2
1,318,239 + SM_b21680 0.53 -0.7
1,318,239 + SM_b21680 0.53 -1.3
1,318,240 - SM_b21680 0.53 +2.6
1,318,240 - SM_b21680 0.53 -1.4
1,318,240 - SM_b21680 0.53 +0.6
1,318,240 - SM_b21680 0.53 +0.7
1,318,240 - SM_b21680 0.53 -0.6
1,318,400 + -2.2
1,318,453 + SM_b21681 0.26 -0.3
1,318,453 + SM_b21681 0.26 -0.9
1,318,454 - SM_b21681 0.27 +0.5
1,318,454 - SM_b21681 0.27 +0.6
1,318,454 - SM_b21681 0.27 +0.6
1,318,454 - SM_b21681 0.27 +2.5
1,318,454 - SM_b21681 0.27 +0.0
1,318,454 - SM_b21681 0.27 +2.1
1,318,581 + -0.4
1,318,718 + +1.0
1,318,826 + SM_b20909 0.45 -1.0
1,318,827 - SM_b20909 0.45 +0.2
1,318,963 + +1.7
1,318,963 + +0.3
1,318,964 - -0.3
1,319,022 + -2.0
1,319,027 + +3.6
1,319,048 + -1.1

Or see this region's nucleotide sequence