Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20906 and SM_b20907 overlap by 8 nucleotides SM_b20907 and SM_b20908 are separated by 224 nucleotides SM_b20908 and SM_b21680 are separated by 30 nucleotides SM_b21680 and SM_b21681 are separated by 94 nucleotides SM_b21681 and SM_b20909 are separated by 111 nucleotides SM_b20909 and SM_b20910 are separated by 58 nucleotides
SM_b20906: SM_b20906 - hypothetical protein, at 1,316,960 to 1,317,265
_b20906
SM_b20907: SM_b20907 - hypothetical protein, at 1,317,258 to 1,317,563
_b20907
SM_b20908: SM_b20908 - hypothetical protein, at 1,317,788 to 1,318,126
_b20908
SM_b21680: SM_b21680 - hypothetical protein, at 1,318,157 to 1,318,312
_b21680
SM_b21681: SM_b21681 - hypothetical protein, at 1,318,407 to 1,318,583
_b21681
SM_b20909: SM_b20909 - hypothetical protein, at 1,318,695 to 1,318,988
_b20909
SM_b20910: SM_b20910 - hypothetical protein, at 1,319,047 to 1,319,355
_b20910
Position (kb)
1317
1318
1319 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1316.892 kb on + strand at 1317.017 kb on + strand, within SM_b20906 at 1317.117 kb on - strand, within SM_b20906 at 1317.133 kb on + strand, within SM_b20906 at 1317.136 kb on + strand, within SM_b20906 at 1317.186 kb on - strand, within SM_b20906 at 1317.209 kb on + strand, within SM_b20906 at 1317.209 kb on + strand, within SM_b20906 at 1317.209 kb on + strand, within SM_b20906 at 1317.210 kb on - strand, within SM_b20906 at 1317.210 kb on - strand, within SM_b20906 at 1317.210 kb on - strand, within SM_b20906 at 1317.211 kb on + strand, within SM_b20906 at 1317.211 kb on + strand, within SM_b20906 at 1317.212 kb on - strand, within SM_b20906 at 1317.264 kb on - strand at 1317.264 kb on - strand at 1317.280 kb on + strand at 1317.280 kb on + strand at 1317.280 kb on + strand at 1317.281 kb on - strand at 1317.281 kb on - strand at 1317.281 kb on - strand at 1317.287 kb on + strand at 1317.310 kb on + strand, within SM_b20907 at 1317.385 kb on + strand, within SM_b20907 at 1317.386 kb on - strand, within SM_b20907 at 1317.386 kb on - strand, within SM_b20907 at 1317.386 kb on - strand, within SM_b20907 at 1317.386 kb on - strand, within SM_b20907 at 1317.452 kb on - strand, within SM_b20907 at 1317.452 kb on - strand, within SM_b20907 at 1317.488 kb on + strand, within SM_b20907 at 1317.518 kb on + strand, within SM_b20907 at 1317.593 kb on + strand at 1317.757 kb on + strand at 1317.758 kb on - strand at 1317.758 kb on - strand at 1317.980 kb on + strand, within SM_b20908 at 1317.980 kb on + strand, within SM_b20908 at 1317.980 kb on + strand, within SM_b20908 at 1317.980 kb on + strand, within SM_b20908 at 1317.981 kb on - strand, within SM_b20908 at 1317.981 kb on - strand, within SM_b20908 at 1318.002 kb on + strand, within SM_b20908 at 1318.003 kb on - strand, within SM_b20908 at 1318.003 kb on - strand, within SM_b20908 at 1318.064 kb on + strand, within SM_b20908 at 1318.065 kb on - strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.072 kb on - strand, within SM_b20908 at 1318.072 kb on - strand, within SM_b20908 at 1318.145 kb on + strand at 1318.178 kb on - strand, within SM_b21680 at 1318.237 kb on + strand, within SM_b21680 at 1318.237 kb on + strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.400 kb on + strand at 1318.453 kb on + strand, within SM_b21681 at 1318.453 kb on + strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.581 kb on + strand at 1318.718 kb on + strand at 1318.826 kb on + strand, within SM_b20909 at 1318.827 kb on - strand, within SM_b20909 at 1318.963 kb on + strand at 1318.963 kb on + strand at 1318.964 kb on - strand at 1319.022 kb on + strand at 1319.027 kb on + strand at 1319.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 1,316,892 + +1.0 1,317,017 + SM_b20906 0.19 -1.1 1,317,117 - SM_b20906 0.51 -1.8 1,317,133 + SM_b20906 0.57 -2.7 1,317,136 + SM_b20906 0.58 +0.3 1,317,186 - SM_b20906 0.74 -1.4 1,317,209 + SM_b20906 0.81 +0.1 1,317,209 + SM_b20906 0.81 -1.5 1,317,209 + SM_b20906 0.81 -0.7 1,317,210 - SM_b20906 0.82 -3.4 1,317,210 - SM_b20906 0.82 -1.1 1,317,210 - SM_b20906 0.82 +0.2 1,317,211 + SM_b20906 0.82 -1.0 1,317,211 + SM_b20906 0.82 -0.8 1,317,212 - SM_b20906 0.82 +0.5 1,317,264 - +0.0 1,317,264 - +1.0 1,317,280 + -0.3 1,317,280 + -1.2 1,317,280 + +0.6 1,317,281 - +1.0 1,317,281 - -0.0 1,317,281 - +2.6 1,317,287 + -0.3 1,317,310 + SM_b20907 0.17 -0.4 1,317,385 + SM_b20907 0.42 -2.1 1,317,386 - SM_b20907 0.42 -0.4 1,317,386 - SM_b20907 0.42 +0.5 1,317,386 - SM_b20907 0.42 +1.5 1,317,386 - SM_b20907 0.42 +1.1 1,317,452 - SM_b20907 0.63 +0.5 1,317,452 - SM_b20907 0.63 -0.1 1,317,488 + SM_b20907 0.75 -0.6 1,317,518 + SM_b20907 0.85 -2.5 1,317,593 + -0.4 1,317,757 + -2.5 1,317,758 - +2.0 1,317,758 - +1.8 1,317,980 + SM_b20908 0.57 +0.5 1,317,980 + SM_b20908 0.57 -0.3 1,317,980 + SM_b20908 0.57 -1.5 1,317,980 + SM_b20908 0.57 +0.3 1,317,981 - SM_b20908 0.57 -1.1 1,317,981 - SM_b20908 0.57 +0.6 1,318,002 + SM_b20908 0.63 +1.5 1,318,003 - SM_b20908 0.63 -0.3 1,318,003 - SM_b20908 0.63 +0.6 1,318,064 + SM_b20908 0.81 +0.2 1,318,065 - SM_b20908 0.82 +0.7 1,318,071 + SM_b20908 0.83 +0.5 1,318,071 + SM_b20908 0.83 -2.8 1,318,071 + SM_b20908 0.83 -0.3 1,318,071 + SM_b20908 0.83 -0.1 1,318,072 - SM_b20908 0.84 +1.3 1,318,072 - SM_b20908 0.84 +1.0 1,318,145 + -0.2 1,318,178 - SM_b21680 0.13 +1.0 1,318,237 + SM_b21680 0.51 -2.3 1,318,237 + SM_b21680 0.51 +0.4 1,318,238 - SM_b21680 0.52 +0.2 1,318,238 - SM_b21680 0.52 +0.3 1,318,238 - SM_b21680 0.52 +0.0 1,318,238 - SM_b21680 0.52 -1.1 1,318,238 - SM_b21680 0.52 -0.7 1,318,239 + SM_b21680 0.53 -2.0 1,318,239 + SM_b21680 0.53 -0.2 1,318,239 + SM_b21680 0.53 -0.7 1,318,239 + SM_b21680 0.53 -1.3 1,318,240 - SM_b21680 0.53 +2.6 1,318,240 - SM_b21680 0.53 -1.4 1,318,240 - SM_b21680 0.53 +0.6 1,318,240 - SM_b21680 0.53 +0.7 1,318,240 - SM_b21680 0.53 -0.6 1,318,400 + -2.2 1,318,453 + SM_b21681 0.26 -0.3 1,318,453 + SM_b21681 0.26 -0.9 1,318,454 - SM_b21681 0.27 +0.5 1,318,454 - SM_b21681 0.27 +0.6 1,318,454 - SM_b21681 0.27 +0.6 1,318,454 - SM_b21681 0.27 +2.5 1,318,454 - SM_b21681 0.27 +0.0 1,318,454 - SM_b21681 0.27 +2.1 1,318,581 + -0.4 1,318,718 + +1.0 1,318,826 + SM_b20909 0.45 -1.0 1,318,827 - SM_b20909 0.45 +0.2 1,318,963 + +1.7 1,318,963 + +0.3 1,318,964 - -0.3 1,319,022 + -2.0 1,319,027 + +3.6 1,319,048 + -1.1
Or see this region's nucleotide sequence