Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20905

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20904 and SM_b21712 are separated by 181 nucleotidesSM_b21712 and SM_b20905 are separated by 38 nucleotidesSM_b20905 and SM_b20906 are separated by 490 nucleotidesSM_b20906 and SM_b20907 overlap by 8 nucleotides SM_b20904: SM_b20904 - sugar uptake ABC transporter ATP-binding protein, at 1,314,215 to 1,315,000 _b20904 SM_b21712: SM_b21712 - tRNA-Arg, at 1,315,182 to 1,315,258 _b21712 SM_b20905: SM_b20905 - transposase, at 1,315,297 to 1,316,469 _b20905 SM_b20906: SM_b20906 - hypothetical protein, at 1,316,960 to 1,317,265 _b20906 SM_b20907: SM_b20907 - hypothetical protein, at 1,317,258 to 1,317,563 _b20907 Position (kb) 1315 1316 1317Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1314.340 kb on + strand, within SM_b20904at 1314.340 kb on + strand, within SM_b20904at 1314.386 kb on + strand, within SM_b20904at 1314.387 kb on - strand, within SM_b20904at 1315.286 kb on + strandat 1315.287 kb on - strandat 1315.287 kb on - strandat 1315.298 kb on + strandat 1315.311 kb on + strandat 1315.311 kb on + strandat 1315.312 kb on - strandat 1315.312 kb on - strandat 1315.312 kb on - strandat 1315.376 kb on + strandat 1315.388 kb on + strandat 1315.389 kb on - strandat 1315.389 kb on - strandat 1315.411 kb on + strandat 1315.411 kb on + strandat 1315.411 kb on + strandat 1315.411 kb on + strandat 1315.411 kb on + strandat 1315.411 kb on + strandat 1315.412 kb on - strandat 1315.412 kb on - strandat 1315.412 kb on - strandat 1315.412 kb on - strandat 1315.487 kb on + strand, within SM_b20905at 1315.487 kb on + strand, within SM_b20905at 1315.583 kb on + strand, within SM_b20905at 1315.583 kb on + strand, within SM_b20905at 1315.583 kb on + strand, within SM_b20905at 1315.584 kb on - strand, within SM_b20905at 1315.605 kb on + strand, within SM_b20905at 1315.605 kb on + strand, within SM_b20905at 1315.771 kb on - strand, within SM_b20905at 1315.926 kb on - strand, within SM_b20905at 1315.926 kb on - strand, within SM_b20905at 1315.967 kb on + strand, within SM_b20905at 1316.007 kb on - strand, within SM_b20905at 1316.039 kb on + strand, within SM_b20905at 1316.040 kb on - strand, within SM_b20905at 1316.055 kb on + strand, within SM_b20905at 1316.300 kb on + strand, within SM_b20905at 1316.347 kb on - strand, within SM_b20905at 1316.347 kb on - strand, within SM_b20905at 1316.348 kb on + strand, within SM_b20905at 1316.348 kb on + strand, within SM_b20905at 1316.512 kb on + strandat 1316.513 kb on - strandat 1316.594 kb on - strandat 1316.608 kb on + strandat 1316.608 kb on + strandat 1316.610 kb on + strandat 1316.610 kb on + strandat 1316.610 kb on + strandat 1316.610 kb on + strandat 1316.610 kb on + strandat 1316.610 kb on + strandat 1316.629 kb on - strandat 1316.629 kb on - strandat 1316.689 kb on + strandat 1316.689 kb on + strandat 1316.766 kb on + strandat 1316.766 kb on + strandat 1316.766 kb on + strandat 1316.766 kb on + strandat 1316.766 kb on + strandat 1316.766 kb on + strandat 1316.766 kb on + strandat 1316.767 kb on - strandat 1316.767 kb on - strandat 1316.767 kb on - strandat 1316.770 kb on + strandat 1316.770 kb on + strandat 1316.892 kb on + strandat 1317.017 kb on + strand, within SM_b20906at 1317.117 kb on - strand, within SM_b20906at 1317.133 kb on + strand, within SM_b20906at 1317.136 kb on + strand, within SM_b20906at 1317.186 kb on - strand, within SM_b20906at 1317.209 kb on + strand, within SM_b20906at 1317.209 kb on + strand, within SM_b20906at 1317.209 kb on + strand, within SM_b20906at 1317.210 kb on - strand, within SM_b20906at 1317.210 kb on - strand, within SM_b20906at 1317.210 kb on - strand, within SM_b20906at 1317.211 kb on + strand, within SM_b20906at 1317.211 kb on + strand, within SM_b20906at 1317.212 kb on - strand, within SM_b20906at 1317.264 kb on - strandat 1317.264 kb on - strandat 1317.280 kb on + strandat 1317.280 kb on + strandat 1317.280 kb on + strandat 1317.281 kb on - strandat 1317.281 kb on - strandat 1317.281 kb on - strandat 1317.287 kb on + strandat 1317.310 kb on + strand, within SM_b20907at 1317.385 kb on + strand, within SM_b20907at 1317.386 kb on - strand, within SM_b20907at 1317.386 kb on - strand, within SM_b20907at 1317.386 kb on - strand, within SM_b20907at 1317.386 kb on - strand, within SM_b20907at 1317.452 kb on - strand, within SM_b20907at 1317.452 kb on - strand, within SM_b20907

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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1,314,340 + SM_b20904 0.16 +1.0
1,314,340 + SM_b20904 0.16 -0.8
1,314,386 + SM_b20904 0.22 -0.5
1,314,387 - SM_b20904 0.22 +0.7
1,315,286 + -0.7
1,315,287 - +2.4
1,315,287 - -0.6
1,315,298 + -1.2
1,315,311 + -1.3
1,315,311 + +0.5
1,315,312 - +0.5
1,315,312 - -0.1
1,315,312 - -2.0
1,315,376 + +0.6
1,315,388 + -0.0
1,315,389 - -0.1
1,315,389 - -1.5
1,315,411 + -0.0
1,315,411 + +1.9
1,315,411 + -0.3
1,315,411 + +1.4
1,315,411 + -1.3
1,315,411 + +0.8
1,315,412 - +0.8
1,315,412 - -0.7
1,315,412 - -1.9
1,315,412 - -2.3
1,315,487 + SM_b20905 0.16 -2.7
1,315,487 + SM_b20905 0.16 +0.0
1,315,583 + SM_b20905 0.24 -0.5
1,315,583 + SM_b20905 0.24 -1.0
1,315,583 + SM_b20905 0.24 -0.4
1,315,584 - SM_b20905 0.24 -0.6
1,315,605 + SM_b20905 0.26 -0.4
1,315,605 + SM_b20905 0.26 +1.6
1,315,771 - SM_b20905 0.40 -0.3
1,315,926 - SM_b20905 0.54 -0.4
1,315,926 - SM_b20905 0.54 -0.0
1,315,967 + SM_b20905 0.57 -0.9
1,316,007 - SM_b20905 0.61 +0.5
1,316,039 + SM_b20905 0.63 -0.2
1,316,040 - SM_b20905 0.63 -0.0
1,316,055 + SM_b20905 0.65 -0.8
1,316,300 + SM_b20905 0.86 -0.5
1,316,347 - SM_b20905 0.90 -0.2
1,316,347 - SM_b20905 0.90 -1.8
1,316,348 + SM_b20905 0.90 -0.9
1,316,348 + SM_b20905 0.90 +0.5
1,316,512 + +0.3
1,316,513 - +0.6
1,316,594 - -0.6
1,316,608 + -1.1
1,316,608 + -0.5
1,316,610 + -0.5
1,316,610 + +2.0
1,316,610 + -0.5
1,316,610 + +0.8
1,316,610 + -0.8
1,316,610 + +0.2
1,316,629 - -0.1
1,316,629 - +0.9
1,316,689 + -0.4
1,316,689 + +0.0
1,316,766 + -1.1
1,316,766 + +0.3
1,316,766 + +0.5
1,316,766 + +0.6
1,316,766 + +1.2
1,316,766 + +0.7
1,316,766 + -0.1
1,316,767 - -0.3
1,316,767 - +0.0
1,316,767 - +1.2
1,316,770 + -1.3
1,316,770 + +1.0
1,316,892 + +1.0
1,317,017 + SM_b20906 0.19 -1.1
1,317,117 - SM_b20906 0.51 -1.8
1,317,133 + SM_b20906 0.57 -2.7
1,317,136 + SM_b20906 0.58 +0.3
1,317,186 - SM_b20906 0.74 -1.4
1,317,209 + SM_b20906 0.81 +0.1
1,317,209 + SM_b20906 0.81 -1.5
1,317,209 + SM_b20906 0.81 -0.7
1,317,210 - SM_b20906 0.82 -3.4
1,317,210 - SM_b20906 0.82 -1.1
1,317,210 - SM_b20906 0.82 +0.2
1,317,211 + SM_b20906 0.82 -1.0
1,317,211 + SM_b20906 0.82 -0.8
1,317,212 - SM_b20906 0.82 +0.5
1,317,264 - +0.0
1,317,264 - +1.0
1,317,280 + -0.3
1,317,280 + -1.2
1,317,280 + +0.6
1,317,281 - +1.0
1,317,281 - -0.0
1,317,281 - +2.6
1,317,287 + -0.3
1,317,310 + SM_b20907 0.17 -0.4
1,317,385 + SM_b20907 0.42 -2.1
1,317,386 - SM_b20907 0.42 -0.4
1,317,386 - SM_b20907 0.42 +0.5
1,317,386 - SM_b20907 0.42 +1.5
1,317,386 - SM_b20907 0.42 +1.1
1,317,452 - SM_b20907 0.63 +0.5
1,317,452 - SM_b20907 0.63 -0.1

Or see this region's nucleotide sequence