Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20692

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20689 and SM_b20690 overlap by 4 nucleotidesSM_b20690 and SM_b20691 are separated by 51 nucleotidesSM_b20691 and SM_b20692 are separated by 309 nucleotidesSM_b20692 and SM_b20694 are separated by 575 nucleotidesSM_b20694 and SM_b20695 are separated by 80 nucleotides SM_b20689: SM_b20689 - exodeoxyribonuclease III protein, at 1,492,447 to 1,493,220 _b20689 SM_b20690: SM_b20690 - hypothetical protein, at 1,493,217 to 1,493,543 _b20690 SM_b20691: SM_b20691 - hypothetical protein, at 1,493,595 to 1,493,816 _b20691 SM_b20692: SM_b20692 - 5-keto-D-gluconate 5-reductase, at 1,494,126 to 1,494,932 _b20692 SM_b20694: SM_b20694 - hypothetical protein, at 1,495,508 to 1,495,684 _b20694 SM_b20695: SM_b20695 - hypothetical protein, at 1,495,765 to 1,496,271 _b20695 Position (kb) 1494 1495Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1493.198 kb on + strandat 1493.198 kb on + strandat 1493.219 kb on - strandat 1493.219 kb on - strandat 1493.219 kb on - strandat 1493.325 kb on + strand, within SM_b20690at 1493.498 kb on + strand, within SM_b20690at 1493.548 kb on + strandat 1493.549 kb on - strandat 1493.549 kb on - strandat 1493.549 kb on - strandat 1493.597 kb on - strandat 1493.762 kb on + strand, within SM_b20691at 1493.764 kb on + strand, within SM_b20691at 1493.764 kb on + strand, within SM_b20691at 1493.942 kb on + strandat 1493.942 kb on + strandat 1493.943 kb on - strandat 1494.157 kb on + strandat 1494.157 kb on + strandat 1494.157 kb on + strandat 1494.162 kb on + strandat 1494.162 kb on + strandat 1494.163 kb on - strandat 1494.163 kb on - strandat 1494.163 kb on - strandat 1494.163 kb on - strandat 1494.323 kb on - strand, within SM_b20692at 1494.471 kb on + strand, within SM_b20692at 1494.653 kb on + strand, within SM_b20692at 1494.782 kb on + strand, within SM_b20692at 1495.013 kb on - strandat 1495.238 kb on + strandat 1495.351 kb on + strandat 1495.351 kb on + strandat 1495.351 kb on + strandat 1495.351 kb on + strandat 1495.471 kb on - strandat 1495.471 kb on - strandat 1495.566 kb on + strandat 1495.682 kb on + strandat 1495.738 kb on + strandat 1495.827 kb on - strand, within SM_b20695at 1495.870 kb on - strand, within SM_b20695at 1495.870 kb on - strand, within SM_b20695at 1495.870 kb on - strand, within SM_b20695

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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1,493,198 + +1.1
1,493,198 + -0.6
1,493,219 - -2.5
1,493,219 - +1.1
1,493,219 - +1.2
1,493,325 + SM_b20690 0.33 -1.8
1,493,498 + SM_b20690 0.86 +1.2
1,493,548 + +0.9
1,493,549 - -2.3
1,493,549 - +0.1
1,493,549 - +1.4
1,493,597 - +0.8
1,493,762 + SM_b20691 0.75 -1.0
1,493,764 + SM_b20691 0.76 -0.9
1,493,764 + SM_b20691 0.76 -1.2
1,493,942 + +2.7
1,493,942 + +2.1
1,493,943 - -1.2
1,494,157 + -0.1
1,494,157 + +0.6
1,494,157 + +0.5
1,494,162 + +0.2
1,494,162 + +3.9
1,494,163 - +0.9
1,494,163 - -1.3
1,494,163 - -1.5
1,494,163 - +1.1
1,494,323 - SM_b20692 0.24 +2.4
1,494,471 + SM_b20692 0.43 -2.7
1,494,653 + SM_b20692 0.65 +0.6
1,494,782 + SM_b20692 0.81 +0.4
1,495,013 - +0.4
1,495,238 + -2.2
1,495,351 + -0.2
1,495,351 + +1.1
1,495,351 + +1.1
1,495,351 + -1.1
1,495,471 - +1.6
1,495,471 - -1.1
1,495,566 + +1.1
1,495,682 + -0.7
1,495,738 + +0.4
1,495,827 - SM_b20695 0.12 +1.1
1,495,870 - SM_b20695 0.21 -0.0
1,495,870 - SM_b20695 0.21 +0.2
1,495,870 - SM_b20695 0.21 +1.4

Or see this region's nucleotide sequence