Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20689 and SM_b20690 overlap by 4 nucleotides SM_b20690 and SM_b20691 are separated by 51 nucleotides SM_b20691 and SM_b20692 are separated by 309 nucleotides SM_b20692 and SM_b20694 are separated by 575 nucleotides SM_b20694 and SM_b20695 are separated by 80 nucleotides
SM_b20689: SM_b20689 - exodeoxyribonuclease III protein, at 1,492,447 to 1,493,220
_b20689
SM_b20690: SM_b20690 - hypothetical protein, at 1,493,217 to 1,493,543
_b20690
SM_b20691: SM_b20691 - hypothetical protein, at 1,493,595 to 1,493,816
_b20691
SM_b20692: SM_b20692 - 5-keto-D-gluconate 5-reductase, at 1,494,126 to 1,494,932
_b20692
SM_b20694: SM_b20694 - hypothetical protein, at 1,495,508 to 1,495,684
_b20694
SM_b20695: SM_b20695 - hypothetical protein, at 1,495,765 to 1,496,271
_b20695
Position (kb)
1494
1495 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1493.198 kb on + strand at 1493.198 kb on + strand at 1493.219 kb on - strand at 1493.219 kb on - strand at 1493.219 kb on - strand at 1493.325 kb on + strand, within SM_b20690 at 1493.498 kb on + strand, within SM_b20690 at 1493.548 kb on + strand at 1493.549 kb on - strand at 1493.549 kb on - strand at 1493.549 kb on - strand at 1493.597 kb on - strand at 1493.762 kb on + strand, within SM_b20691 at 1493.764 kb on + strand, within SM_b20691 at 1493.764 kb on + strand, within SM_b20691 at 1493.942 kb on + strand at 1493.942 kb on + strand at 1493.943 kb on - strand at 1494.157 kb on + strand at 1494.157 kb on + strand at 1494.157 kb on + strand at 1494.162 kb on + strand at 1494.162 kb on + strand at 1494.163 kb on - strand at 1494.163 kb on - strand at 1494.163 kb on - strand at 1494.163 kb on - strand at 1494.323 kb on - strand, within SM_b20692 at 1494.471 kb on + strand, within SM_b20692 at 1494.653 kb on + strand, within SM_b20692 at 1494.782 kb on + strand, within SM_b20692 at 1495.013 kb on - strand at 1495.238 kb on + strand at 1495.351 kb on + strand at 1495.351 kb on + strand at 1495.351 kb on + strand at 1495.351 kb on + strand at 1495.471 kb on - strand at 1495.471 kb on - strand at 1495.566 kb on + strand at 1495.682 kb on + strand at 1495.738 kb on + strand at 1495.827 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 1,493,198 + +1.1 1,493,198 + -0.6 1,493,219 - -2.5 1,493,219 - +1.1 1,493,219 - +1.2 1,493,325 + SM_b20690 0.33 -1.8 1,493,498 + SM_b20690 0.86 +1.2 1,493,548 + +0.9 1,493,549 - -2.3 1,493,549 - +0.1 1,493,549 - +1.4 1,493,597 - +0.8 1,493,762 + SM_b20691 0.75 -1.0 1,493,764 + SM_b20691 0.76 -0.9 1,493,764 + SM_b20691 0.76 -1.2 1,493,942 + +2.7 1,493,942 + +2.1 1,493,943 - -1.2 1,494,157 + -0.1 1,494,157 + +0.6 1,494,157 + +0.5 1,494,162 + +0.2 1,494,162 + +3.9 1,494,163 - +0.9 1,494,163 - -1.3 1,494,163 - -1.5 1,494,163 - +1.1 1,494,323 - SM_b20692 0.24 +2.4 1,494,471 + SM_b20692 0.43 -2.7 1,494,653 + SM_b20692 0.65 +0.6 1,494,782 + SM_b20692 0.81 +0.4 1,495,013 - +0.4 1,495,238 + -2.2 1,495,351 + -0.2 1,495,351 + +1.1 1,495,351 + +1.1 1,495,351 + -1.1 1,495,471 - +1.6 1,495,471 - -1.1 1,495,566 + +1.1 1,495,682 + -0.7 1,495,738 + +0.4 1,495,827 - SM_b20695 0.12 +1.1 1,495,870 - SM_b20695 0.21 -0.0 1,495,870 - SM_b20695 0.21 +0.2 1,495,870 - SM_b20695 0.21 +1.4
Or see this region's nucleotide sequence