Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20577 and SM_b20578 are separated by 16 nucleotides SM_b20578 and SM_b20579 overlap by 4 nucleotides SM_b20579 and SM_b20580 are separated by 94 nucleotides
SM_b20577: SM_b20577 - protocatechuate 3,4-dioxygenase subunit beta, at 1,591,223 to 1,591,984
_b20577
SM_b20578: SM_b20578 - gamma carboxymuconolactone decarboxylase, at 1,592,001 to 1,592,408
_b20578
SM_b20579: SM_b20579 - beta-ketoadipate enol-lactone hydrolase, at 1,592,405 to 1,593,211
_b20579
SM_b20580: SM_b20580 - LysR family transcriptional regulator, at 1,593,306 to 1,594,247
_b20580
Position (kb)
1592
1593
1594 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1591.416 kb on + strand, within SM_b20577 at 1591.416 kb on + strand, within SM_b20577 at 1591.416 kb on + strand, within SM_b20577 at 1591.416 kb on + strand, within SM_b20577 at 1591.472 kb on - strand, within SM_b20577 at 1591.513 kb on - strand, within SM_b20577 at 1591.759 kb on + strand, within SM_b20577 at 1591.759 kb on + strand, within SM_b20577 at 1592.086 kb on + strand, within SM_b20578 at 1592.086 kb on + strand, within SM_b20578 at 1592.087 kb on - strand, within SM_b20578 at 1592.087 kb on - strand, within SM_b20578 at 1592.087 kb on - strand, within SM_b20578 at 1592.117 kb on + strand, within SM_b20578 at 1592.118 kb on - strand, within SM_b20578 at 1592.343 kb on + strand, within SM_b20578 at 1592.344 kb on - strand, within SM_b20578 at 1592.487 kb on - strand, within SM_b20579 at 1592.488 kb on + strand, within SM_b20579 at 1592.488 kb on + strand, within SM_b20579 at 1592.488 kb on + strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.529 kb on - strand, within SM_b20579 at 1593.006 kb on + strand, within SM_b20579 at 1593.174 kb on + strand at 1593.267 kb on - strand at 1593.299 kb on - strand at 1593.323 kb on + strand at 1593.892 kb on - strand, within SM_b20580 at 1594.139 kb on + strand, within SM_b20580 at 1594.140 kb on - strand, within SM_b20580 at 1594.140 kb on - strand, within SM_b20580
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 1,591,416 + SM_b20577 0.25 +0.5 1,591,416 + SM_b20577 0.25 +1.1 1,591,416 + SM_b20577 0.25 +0.2 1,591,416 + SM_b20577 0.25 +1.2 1,591,472 - SM_b20577 0.33 -1.7 1,591,513 - SM_b20577 0.38 -0.3 1,591,759 + SM_b20577 0.70 +0.1 1,591,759 + SM_b20577 0.70 -2.3 1,592,086 + SM_b20578 0.21 +1.5 1,592,086 + SM_b20578 0.21 +0.7 1,592,087 - SM_b20578 0.21 -1.7 1,592,087 - SM_b20578 0.21 +0.4 1,592,087 - SM_b20578 0.21 +1.1 1,592,117 + SM_b20578 0.28 +0.6 1,592,118 - SM_b20578 0.29 -0.3 1,592,343 + SM_b20578 0.84 +0.3 1,592,344 - SM_b20578 0.84 +0.7 1,592,487 - SM_b20579 0.10 +0.2 1,592,488 + SM_b20579 0.10 +3.4 1,592,488 + SM_b20579 0.10 -0.8 1,592,488 + SM_b20579 0.10 -0.8 1,592,489 - SM_b20579 0.10 -1.3 1,592,489 - SM_b20579 0.10 -1.1 1,592,489 - SM_b20579 0.10 +1.7 1,592,489 - SM_b20579 0.10 +0.3 1,592,489 - SM_b20579 0.10 +1.4 1,592,489 - SM_b20579 0.10 -0.6 1,592,489 - SM_b20579 0.10 -0.9 1,592,489 - SM_b20579 0.10 +0.5 1,592,529 - SM_b20579 0.15 -0.3 1,593,006 + SM_b20579 0.74 -0.6 1,593,174 + +1.6 1,593,267 - +0.2 1,593,299 - +0.1 1,593,323 + +0.2 1,593,892 - SM_b20580 0.62 -0.8 1,594,139 + SM_b20580 0.88 -1.2 1,594,140 - SM_b20580 0.89 +1.3 1,594,140 - SM_b20580 0.89 +0.6
Or see this region's nucleotide sequence