Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20482 and SM_b20483 are separated by 7 nucleotides SM_b20483 and SM_b20484 are separated by 273 nucleotides
SM_b20482: SM_b20482 - hypothetical protein, at 496,696 to 498,483
_b20482
SM_b20483: SM_b20483 - catabolite repressor protein, at 498,491 to 499,561
_b20483
SM_b20484: SM_b20484 - sugar ABC transporter substrate-binding protein, at 499,835 to 500,827
_b20484
Position (kb) 498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 497.542 kb on + strand, within SM_b20482 at 497.543 kb on - strand, within SM_b20482 at 497.820 kb on - strand, within SM_b20482 at 498.003 kb on + strand, within SM_b20482 at 498.003 kb on + strand, within SM_b20482 at 498.003 kb on + strand, within SM_b20482 at 498.003 kb on + strand, within SM_b20482 at 498.004 kb on - strand, within SM_b20482 at 498.004 kb on - strand, within SM_b20482 at 498.004 kb on - strand, within SM_b20482 at 498.188 kb on + strand, within SM_b20482 at 498.446 kb on + strand at 498.446 kb on + strand at 498.447 kb on - strand at 498.482 kb on - strand at 498.581 kb on + strand at 498.696 kb on + strand, within SM_b20483 at 498.696 kb on + strand, within SM_b20483 at 498.696 kb on + strand, within SM_b20483 at 498.697 kb on - strand, within SM_b20483 at 498.826 kb on - strand, within SM_b20483 at 498.878 kb on + strand, within SM_b20483 at 498.878 kb on + strand, within SM_b20483 at 498.879 kb on - strand, within SM_b20483 at 498.936 kb on - strand, within SM_b20483 at 498.936 kb on - strand, within SM_b20483 at 498.978 kb on + strand, within SM_b20483 at 499.108 kb on + strand, within SM_b20483 at 499.109 kb on - strand at 499.109 kb on - strand, within SM_b20483 at 499.115 kb on + strand, within SM_b20483 at 499.115 kb on + strand, within SM_b20483 at 499.116 kb on - strand, within SM_b20483 at 499.172 kb on - strand, within SM_b20483 at 499.191 kb on + strand, within SM_b20483 at 499.192 kb on - strand, within SM_b20483 at 499.274 kb on - strand, within SM_b20483 at 499.274 kb on - strand, within SM_b20483 at 499.328 kb on + strand, within SM_b20483 at 499.370 kb on + strand, within SM_b20483 at 499.399 kb on - strand, within SM_b20483 at 499.476 kb on - strand at 499.527 kb on + strand at 499.527 kb on + strand at 499.528 kb on - strand at 499.528 kb on - strand at 499.643 kb on + strand at 499.892 kb on + strand at 499.892 kb on + strand at 499.950 kb on + strand, within SM_b20484 at 500.106 kb on + strand, within SM_b20484 at 500.291 kb on + strand, within SM_b20484 at 500.292 kb on - strand, within SM_b20484 at 500.357 kb on + strand, within SM_b20484 at 500.358 kb on - strand, within SM_b20484
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 497,542 + SM_b20482 0.47 +0.5 497,543 - SM_b20482 0.47 -1.0 497,820 - SM_b20482 0.63 +0.1 498,003 + SM_b20482 0.73 -0.6 498,003 + SM_b20482 0.73 -0.2 498,003 + SM_b20482 0.73 +0.7 498,003 + SM_b20482 0.73 -0.5 498,004 - SM_b20482 0.73 -0.4 498,004 - SM_b20482 0.73 +0.4 498,004 - SM_b20482 0.73 -0.7 498,188 + SM_b20482 0.83 -0.8 498,446 + +1.1 498,446 + -1.3 498,447 - +1.8 498,482 - -0.5 498,581 + +2.7 498,696 + SM_b20483 0.19 -0.4 498,696 + SM_b20483 0.19 -0.3 498,696 + SM_b20483 0.19 +2.9 498,697 - SM_b20483 0.19 -0.9 498,826 - SM_b20483 0.31 +0.8 498,878 + SM_b20483 0.36 -1.3 498,878 + SM_b20483 0.36 -1.0 498,879 - SM_b20483 0.36 -1.5 498,936 - SM_b20483 0.42 -1.1 498,936 - SM_b20483 0.42 -2.7 498,978 + SM_b20483 0.45 -1.1 499,108 + SM_b20483 0.58 -1.9 499,109 - +1.1 499,109 - SM_b20483 0.58 +2.7 499,115 + SM_b20483 0.58 -2.8 499,115 + SM_b20483 0.58 +0.0 499,116 - SM_b20483 0.58 -1.2 499,172 - SM_b20483 0.64 +0.1 499,191 + SM_b20483 0.65 -0.1 499,192 - SM_b20483 0.65 +0.1 499,274 - SM_b20483 0.73 -0.4 499,274 - SM_b20483 0.73 +0.6 499,328 + SM_b20483 0.78 +1.0 499,370 + SM_b20483 0.82 -0.3 499,399 - SM_b20483 0.85 +0.6 499,476 - +0.8 499,527 + +0.5 499,527 + -0.0 499,528 - +2.0 499,528 - +1.7 499,643 + -0.3 499,892 + -0.3 499,892 + +1.1 499,950 + SM_b20484 0.12 -0.1 500,106 + SM_b20484 0.27 +1.1 500,291 + SM_b20484 0.46 -0.2 500,292 - SM_b20484 0.46 -0.3 500,357 + SM_b20484 0.53 +0.1 500,358 - SM_b20484 0.53 -0.4
Or see this region's nucleotide sequence