Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20272 and SM_b20273 are separated by 72 nucleotides SM_b20273 and SM_b20274 are separated by 255 nucleotides SM_b20274 and SM_b20275 are separated by 177 nucleotides SM_b20275 and SM_b20276 are separated by 91 nucleotides SM_b20276 and SM_b20277 overlap by 4 nucleotides
SM_b20272: SM_b20272 - transporter protein, at 277,378 to 278,586
_b20272
SM_b20273: SM_b20273 - hypothetical protein, at 278,659 to 278,844
_b20273
SM_b20274: SM_b20274 - hypothetical protein, at 279,100 to 279,285
_b20274
SM_b20275: SM_b20275 - hypothetical protein, at 279,463 to 280,323
_b20275
SM_b20276: SM_b20276 - transcriptional regulator, at 280,415 to 281,305
_b20276
SM_b20277: SM_b20277 - hypothetical protein, at 281,302 to 282,645
_b20277
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2 at 278.479 kb on + strand at 278.480 kb on - strand at 278.480 kb on - strand at 278.480 kb on - strand at 278.491 kb on + strand at 278.492 kb on - strand at 278.667 kb on + strand at 278.725 kb on + strand, within SM_b20273 at 278.727 kb on + strand, within SM_b20273 at 278.728 kb on - strand, within SM_b20273 at 278.728 kb on - strand, within SM_b20273 at 279.045 kb on - strand at 279.102 kb on - strand at 279.138 kb on - strand, within SM_b20274 at 279.189 kb on - strand, within SM_b20274 at 279.206 kb on - strand, within SM_b20274 at 279.217 kb on + strand, within SM_b20274 at 279.217 kb on + strand, within SM_b20274 at 279.227 kb on - strand, within SM_b20274 at 279.334 kb on - strand at 279.783 kb on + strand, within SM_b20275 at 279.797 kb on - strand, within SM_b20275 at 279.800 kb on + strand, within SM_b20275 at 279.800 kb on + strand, within SM_b20275 at 279.800 kb on + strand, within SM_b20275 at 279.801 kb on - strand, within SM_b20275 at 279.801 kb on - strand, within SM_b20275 at 280.037 kb on + strand, within SM_b20275 at 280.038 kb on - strand, within SM_b20275 at 280.406 kb on - strand at 280.494 kb on - strand at 280.495 kb on + strand at 280.610 kb on + strand, within SM_b20276 at 280.611 kb on - strand, within SM_b20276 at 280.611 kb on - strand, within SM_b20276 at 280.631 kb on + strand, within SM_b20276 at 280.884 kb on - strand, within SM_b20276 at 280.885 kb on + strand, within SM_b20276 at 280.885 kb on + strand, within SM_b20276 at 280.886 kb on - strand, within SM_b20276 at 281.005 kb on + strand, within SM_b20276 at 281.033 kb on + strand at 281.033 kb on + strand, within SM_b20276 at 281.034 kb on - strand, within SM_b20276 at 281.034 kb on - strand, within SM_b20276
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 278,479 + -0.5 278,480 - +0.9 278,480 - -0.4 278,480 - +0.5 278,491 + +0.0 278,492 - +1.0 278,667 + +0.2 278,725 + SM_b20273 0.35 -0.2 278,727 + SM_b20273 0.37 -0.7 278,728 - SM_b20273 0.37 -0.2 278,728 - SM_b20273 0.37 +0.1 279,045 - +1.2 279,102 - -0.4 279,138 - SM_b20274 0.20 +0.2 279,189 - SM_b20274 0.48 +0.4 279,206 - SM_b20274 0.57 +0.4 279,217 + SM_b20274 0.63 -1.8 279,217 + SM_b20274 0.63 -0.6 279,227 - SM_b20274 0.68 -0.8 279,334 - +0.5 279,783 + SM_b20275 0.37 +0.5 279,797 - SM_b20275 0.39 +0.7 279,800 + SM_b20275 0.39 +0.4 279,800 + SM_b20275 0.39 +0.5 279,800 + SM_b20275 0.39 +1.9 279,801 - SM_b20275 0.39 +0.6 279,801 - SM_b20275 0.39 +0.6 280,037 + SM_b20275 0.67 -1.2 280,038 - SM_b20275 0.67 +0.3 280,406 - -0.3 280,494 - +1.4 280,495 + +2.6 280,610 + SM_b20276 0.22 -0.6 280,611 - SM_b20276 0.22 +0.2 280,611 - SM_b20276 0.22 -0.5 280,631 + SM_b20276 0.24 +0.1 280,884 - SM_b20276 0.53 -0.1 280,885 + SM_b20276 0.53 -0.5 280,885 + SM_b20276 0.53 -0.8 280,886 - SM_b20276 0.53 -0.5 281,005 + SM_b20276 0.66 +0.3 281,033 + +1.2 281,033 + SM_b20276 0.69 +0.7 281,034 - SM_b20276 0.69 -0.1 281,034 - SM_b20276 0.69 -0.7
Or see this region's nucleotide sequence