Experiment: Aluminum chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20270 and SM_b20271 are separated by 83 nucleotides SM_b20271 and SM_b20272 are separated by 400 nucleotides
SM_b20270: SM_b20270 - proline racemase, at 275,434 to 276,462
_b20270
SM_b20271: SM_b20271 - hypothetical protein, at 276,546 to 276,977
_b20271
SM_b20272: SM_b20272 - transporter protein, at 277,378 to 278,586
_b20272
Position (kb) 276
277 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 275.689 kb on - strand, within SM_b20270 at 275.847 kb on + strand, within SM_b20270 at 275.848 kb on - strand, within SM_b20270 at 275.848 kb on - strand, within SM_b20270 at 276.378 kb on + strand at 276.641 kb on + strand, within SM_b20271 at 277.087 kb on + strand at 277.088 kb on - strand at 277.265 kb on + strand at 277.265 kb on + strand at 277.266 kb on - strand at 277.266 kb on - strand at 277.394 kb on - strand at 277.512 kb on + strand, within SM_b20272 at 277.513 kb on - strand, within SM_b20272 at 277.514 kb on + strand, within SM_b20272 at 277.560 kb on + strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.782 kb on - strand, within SM_b20272 at 277.782 kb on - strand, within SM_b20272 at 277.849 kb on - strand, within SM_b20272 at 277.855 kb on + strand, within SM_b20272 at 277.856 kb on - strand, within SM_b20272 at 277.883 kb on + strand, within SM_b20272 at 277.953 kb on + strand, within SM_b20272 at 277.953 kb on + strand, within SM_b20272
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride remove 275,689 - SM_b20270 0.25 +0.4 275,847 + SM_b20270 0.40 +0.8 275,848 - SM_b20270 0.40 +0.6 275,848 - SM_b20270 0.40 -0.1 276,378 + -0.9 276,641 + SM_b20271 0.22 -1.0 277,087 + +0.0 277,088 - -0.1 277,265 + +0.1 277,265 + +0.5 277,266 - -1.6 277,266 - +0.1 277,394 - -1.0 277,512 + SM_b20272 0.11 -2.1 277,513 - SM_b20272 0.11 +0.1 277,514 + SM_b20272 0.11 -2.7 277,560 + SM_b20272 0.15 -1.8 277,561 - SM_b20272 0.15 +0.4 277,561 - SM_b20272 0.15 +0.2 277,561 - SM_b20272 0.15 +0.9 277,561 - SM_b20272 0.15 -1.4 277,782 - SM_b20272 0.33 +1.2 277,782 - SM_b20272 0.33 -1.4 277,849 - SM_b20272 0.39 -1.1 277,855 + SM_b20272 0.39 -0.1 277,856 - SM_b20272 0.40 +0.1 277,883 + SM_b20272 0.42 +0.3 277,953 + SM_b20272 0.48 -4.3 277,953 + SM_b20272 0.48 +0.0
Or see this region's nucleotide sequence