Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20103

Experiment: Aluminum chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20102 and SM_b20103 are separated by 214 nucleotidesSM_b20103 and SM_b20104 are separated by 75 nucleotidesSM_b20104 and SM_b20105 are separated by 101 nucleotides SM_b20102: SM_b20102 - acetoin catabolism regulatory protein, at 111,176 to 113,059 _b20102 SM_b20103: SM_b20103 - FAD-dependent oxidoreductase, at 113,274 to 115,076 _b20103 SM_b20104: SM_b20104 - hypothetical protein, at 115,152 to 115,910 _b20104 SM_b20105: SM_b20105 - transcriptional regulator, at 116,012 to 116,644 _b20105 Position (kb) 113 114 115 116Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 112.643 kb on + strand, within SM_b20102at 112.644 kb on - strand, within SM_b20102at 112.752 kb on + strand, within SM_b20102at 112.753 kb on - strand, within SM_b20102at 113.269 kb on + strandat 113.385 kb on + strandat 113.711 kb on + strand, within SM_b20103at 113.758 kb on - strand, within SM_b20103at 113.758 kb on - strand, within SM_b20103at 113.895 kb on + strand, within SM_b20103at 113.895 kb on + strand, within SM_b20103at 113.928 kb on + strand, within SM_b20103at 113.929 kb on - strand, within SM_b20103at 113.943 kb on + strand, within SM_b20103at 113.944 kb on - strand, within SM_b20103at 113.944 kb on - strand, within SM_b20103at 113.944 kb on - strand, within SM_b20103at 113.945 kb on + strand, within SM_b20103at 113.946 kb on - strand, within SM_b20103at 114.012 kb on + strand, within SM_b20103at 114.012 kb on + strand, within SM_b20103at 114.013 kb on - strand, within SM_b20103at 114.013 kb on - strand, within SM_b20103at 114.013 kb on - strand, within SM_b20103at 114.013 kb on - strand, within SM_b20103at 114.013 kb on - strand, within SM_b20103at 114.014 kb on + strand, within SM_b20103at 114.015 kb on - strand, within SM_b20103at 114.037 kb on - strand, within SM_b20103at 114.037 kb on - strand, within SM_b20103at 114.415 kb on - strand, within SM_b20103at 114.549 kb on + strand, within SM_b20103at 114.618 kb on + strand, within SM_b20103at 114.619 kb on - strand, within SM_b20103at 114.642 kb on + strand, within SM_b20103at 114.642 kb on + strand, within SM_b20103at 114.642 kb on + strand, within SM_b20103at 114.643 kb on - strand, within SM_b20103at 114.643 kb on - strand, within SM_b20103at 114.643 kb on - strand, within SM_b20103at 114.645 kb on - strand, within SM_b20103at 114.777 kb on + strand, within SM_b20103at 114.985 kb on - strandat 114.994 kb on - strandat 115.031 kb on - strandat 115.031 kb on - strandat 115.045 kb on - strandat 115.254 kb on - strand, within SM_b20104at 115.367 kb on + strand, within SM_b20104at 115.367 kb on + strand, within SM_b20104at 115.367 kb on + strand, within SM_b20104at 115.368 kb on - strand, within SM_b20104at 115.369 kb on + strand, within SM_b20104at 115.369 kb on + strand, within SM_b20104at 115.369 kb on + strand, within SM_b20104at 115.369 kb on + strand, within SM_b20104at 115.370 kb on - strand, within SM_b20104at 115.370 kb on - strand, within SM_b20104at 115.370 kb on - strand, within SM_b20104at 115.423 kb on - strand, within SM_b20104at 115.440 kb on - strand, within SM_b20104at 115.541 kb on + strand, within SM_b20104at 115.541 kb on + strandat 115.541 kb on + strand, within SM_b20104at 115.541 kb on + strand, within SM_b20104at 115.542 kb on - strand, within SM_b20104at 115.580 kb on - strand, within SM_b20104at 115.588 kb on - strand, within SM_b20104at 115.900 kb on + strandat 115.901 kb on - strandat 115.983 kb on + strandat 115.983 kb on + strandat 115.984 kb on - strandat 115.984 kb on - strandat 116.013 kb on + strandat 116.024 kb on + strandat 116.024 kb on + strandat 116.025 kb on - strandat 116.025 kb on - strandat 116.025 kb on - strandat 116.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride
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112,643 + SM_b20102 0.78 +0.7
112,644 - SM_b20102 0.78 -1.4
112,752 + SM_b20102 0.84 -0.9
112,753 - SM_b20102 0.84 -1.2
113,269 + +1.5
113,385 + +0.6
113,711 + SM_b20103 0.24 +1.2
113,758 - SM_b20103 0.27 -1.8
113,758 - SM_b20103 0.27 -0.4
113,895 + SM_b20103 0.34 -0.4
113,895 + SM_b20103 0.34 +0.6
113,928 + SM_b20103 0.36 +2.2
113,929 - SM_b20103 0.36 +0.9
113,943 + SM_b20103 0.37 -0.1
113,944 - SM_b20103 0.37 -0.1
113,944 - SM_b20103 0.37 +0.2
113,944 - SM_b20103 0.37 +0.1
113,945 + SM_b20103 0.37 -0.3
113,946 - SM_b20103 0.37 -2.4
114,012 + SM_b20103 0.41 +0.2
114,012 + SM_b20103 0.41 -0.5
114,013 - SM_b20103 0.41 -0.1
114,013 - SM_b20103 0.41 +4.0
114,013 - SM_b20103 0.41 -0.6
114,013 - SM_b20103 0.41 +0.2
114,013 - SM_b20103 0.41 +3.2
114,014 + SM_b20103 0.41 -1.6
114,015 - SM_b20103 0.41 -0.4
114,037 - SM_b20103 0.42 -3.6
114,037 - SM_b20103 0.42 +0.2
114,415 - SM_b20103 0.63 +1.1
114,549 + SM_b20103 0.71 -0.5
114,618 + SM_b20103 0.75 +1.7
114,619 - SM_b20103 0.75 -0.7
114,642 + SM_b20103 0.76 -1.7
114,642 + SM_b20103 0.76 +0.6
114,642 + SM_b20103 0.76 -0.5
114,643 - SM_b20103 0.76 -1.8
114,643 - SM_b20103 0.76 +0.9
114,643 - SM_b20103 0.76 +1.7
114,645 - SM_b20103 0.76 -1.7
114,777 + SM_b20103 0.83 -1.6
114,985 - +0.4
114,994 - -0.1
115,031 - -1.4
115,031 - +0.2
115,045 - +0.4
115,254 - SM_b20104 0.13 +0.0
115,367 + SM_b20104 0.28 -0.3
115,367 + SM_b20104 0.28 -0.3
115,367 + SM_b20104 0.28 +1.5
115,368 - SM_b20104 0.28 -0.8
115,369 + SM_b20104 0.29 -0.5
115,369 + SM_b20104 0.29 +2.0
115,369 + SM_b20104 0.29 -1.1
115,369 + SM_b20104 0.29 -1.2
115,370 - SM_b20104 0.29 -1.8
115,370 - SM_b20104 0.29 +1.2
115,370 - SM_b20104 0.29 +2.5
115,423 - SM_b20104 0.36 -1.0
115,440 - SM_b20104 0.38 -1.8
115,541 + SM_b20104 0.51 -1.5
115,541 + +3.2
115,541 + SM_b20104 0.51 +1.5
115,541 + SM_b20104 0.51 +0.4
115,542 - SM_b20104 0.51 -0.8
115,580 - SM_b20104 0.56 -0.1
115,588 - SM_b20104 0.57 -0.7
115,900 + -0.9
115,901 - -0.8
115,983 + -1.1
115,983 + +0.3
115,984 - -1.4
115,984 - -0.9
116,013 + -0.4
116,024 + +0.1
116,024 + -0.1
116,025 - -3.9
116,025 - +3.4
116,025 - -0.6
116,025 - +1.2

Or see this region's nucleotide sequence