Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_484

Experiment: N1B4wt with N2E2m denitrifying replicate B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_483 and Pf6N2E2_484 are separated by 320 nucleotidesPf6N2E2_484 and Pf6N2E2_485 are separated by 196 nucleotides Pf6N2E2_483 - FIG146518: Zn-dependent hydrolases, including glyoxylases, at 549,289 to 550,152 _483 Pf6N2E2_484 - Aldose 1-epimerase, at 550,473 to 551,342 _484 Pf6N2E2_485 - TRAP-type C4-dicarboxylate transport system, large permease component, at 551,539 to 552,819 _485 Position (kb) 550 551 552Strain fitness (log2 ratio) -3 -2 -1 0 1at 549.533 kb on + strand, within Pf6N2E2_483at 549.548 kb on + strand, within Pf6N2E2_483at 549.548 kb on + strand, within Pf6N2E2_483at 549.548 kb on + strand, within Pf6N2E2_483at 549.548 kb on + strand, within Pf6N2E2_483at 549.549 kb on - strand, within Pf6N2E2_483at 549.549 kb on - strand, within Pf6N2E2_483at 549.549 kb on - strand, within Pf6N2E2_483at 549.596 kb on + strand, within Pf6N2E2_483at 549.597 kb on - strand, within Pf6N2E2_483at 549.597 kb on - strand, within Pf6N2E2_483at 549.698 kb on + strand, within Pf6N2E2_483at 549.911 kb on + strand, within Pf6N2E2_483at 549.912 kb on - strandat 549.912 kb on - strand, within Pf6N2E2_483at 550.100 kb on + strandat 550.100 kb on + strandat 550.100 kb on + strandat 550.100 kb on + strandat 550.100 kb on + strandat 550.101 kb on - strandat 550.101 kb on - strandat 550.101 kb on - strandat 550.106 kb on + strandat 550.106 kb on + strandat 550.106 kb on + strandat 550.106 kb on + strandat 550.106 kb on + strandat 550.107 kb on - strandat 550.107 kb on - strandat 550.107 kb on - strandat 550.107 kb on - strandat 550.237 kb on + strandat 550.243 kb on - strandat 550.266 kb on + strandat 550.267 kb on - strandat 550.267 kb on - strandat 550.267 kb on - strandat 550.267 kb on - strandat 550.288 kb on - strandat 550.288 kb on - strandat 550.474 kb on + strandat 550.621 kb on + strand, within Pf6N2E2_484at 550.622 kb on - strand, within Pf6N2E2_484at 550.633 kb on + strand, within Pf6N2E2_484at 550.633 kb on + strand, within Pf6N2E2_484at 550.634 kb on - strand, within Pf6N2E2_484at 550.659 kb on + strand, within Pf6N2E2_484at 550.659 kb on + strand, within Pf6N2E2_484at 550.659 kb on + strand, within Pf6N2E2_484at 550.659 kb on + strand, within Pf6N2E2_484at 550.660 kb on - strand, within Pf6N2E2_484at 550.660 kb on - strand, within Pf6N2E2_484at 550.660 kb on - strand, within Pf6N2E2_484at 550.671 kb on + strand, within Pf6N2E2_484at 550.671 kb on + strand, within Pf6N2E2_484at 550.671 kb on + strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.672 kb on - strand, within Pf6N2E2_484at 550.743 kb on + strand, within Pf6N2E2_484at 550.870 kb on + strand, within Pf6N2E2_484at 550.871 kb on - strand, within Pf6N2E2_484at 551.540 kb on + strandat 551.541 kb on - strandat 551.541 kb on - strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.582 kb on + strandat 551.583 kb on - strandat 551.583 kb on - strandat 551.583 kb on - strandat 551.583 kb on - strandat 551.583 kb on - strandat 551.583 kb on - strandat 551.618 kb on + strandat 551.618 kb on + strandat 551.879 kb on + strand, within Pf6N2E2_485at 551.948 kb on + strand, within Pf6N2E2_485at 551.948 kb on + strand, within Pf6N2E2_485at 551.949 kb on - strand, within Pf6N2E2_485at 551.949 kb on - strand, within Pf6N2E2_485at 552.006 kb on + strand, within Pf6N2E2_485at 552.007 kb on - strand, within Pf6N2E2_485at 552.007 kb on - strand, within Pf6N2E2_485at 552.007 kb on - strand, within Pf6N2E2_485at 552.042 kb on - strand, within Pf6N2E2_485at 552.042 kb on - strand, within Pf6N2E2_485at 552.050 kb on + strand, within Pf6N2E2_485at 552.224 kb on + strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N1B4wt with N2E2m denitrifying replicate B
remove
549,533 + Pf6N2E2_483 0.28 +0.4
549,548 + Pf6N2E2_483 0.30 +1.2
549,548 + Pf6N2E2_483 0.30 -0.2
549,548 + Pf6N2E2_483 0.30 -0.4
549,548 + Pf6N2E2_483 0.30 -0.4
549,549 - Pf6N2E2_483 0.30 -0.8
549,549 - Pf6N2E2_483 0.30 +0.7
549,549 - Pf6N2E2_483 0.30 -0.4
549,596 + Pf6N2E2_483 0.36 -0.6
549,597 - Pf6N2E2_483 0.36 -0.1
549,597 - Pf6N2E2_483 0.36 -0.0
549,698 + Pf6N2E2_483 0.47 +0.4
549,911 + Pf6N2E2_483 0.72 +0.7
549,912 - -0.0
549,912 - Pf6N2E2_483 0.72 -0.0
550,100 + -0.0
550,100 + -0.1
550,100 + +0.3
550,100 + -0.0
550,100 + +1.1
550,101 - -0.4
550,101 - +0.0
550,101 - +0.3
550,106 + +0.1
550,106 + -0.5
550,106 + +1.2
550,106 + -0.2
550,106 + -0.3
550,107 - -0.1
550,107 - +0.1
550,107 - -0.6
550,107 - -0.4
550,237 + -0.0
550,243 - -0.2
550,266 + -0.2
550,267 - +0.2
550,267 - -0.7
550,267 - +0.4
550,267 - -0.8
550,288 - +0.2
550,288 - +0.0
550,474 + +0.9
550,621 + Pf6N2E2_484 0.17 -0.6
550,622 - Pf6N2E2_484 0.17 +0.5
550,633 + Pf6N2E2_484 0.18 -0.6
550,633 + Pf6N2E2_484 0.18 -0.2
550,634 - Pf6N2E2_484 0.19 -0.2
550,659 + Pf6N2E2_484 0.21 -2.9
550,659 + Pf6N2E2_484 0.21 -1.8
550,659 + Pf6N2E2_484 0.21 -0.4
550,659 + Pf6N2E2_484 0.21 -0.4
550,660 - Pf6N2E2_484 0.21 +0.2
550,660 - Pf6N2E2_484 0.21 -0.1
550,660 - Pf6N2E2_484 0.21 -0.6
550,671 + Pf6N2E2_484 0.23 -0.8
550,671 + Pf6N2E2_484 0.23 -0.1
550,671 + Pf6N2E2_484 0.23 -0.3
550,672 - Pf6N2E2_484 0.23 +0.0
550,672 - Pf6N2E2_484 0.23 +0.3
550,672 - Pf6N2E2_484 0.23 +0.8
550,672 - Pf6N2E2_484 0.23 -0.8
550,672 - Pf6N2E2_484 0.23 -0.6
550,672 - Pf6N2E2_484 0.23 -0.0
550,672 - Pf6N2E2_484 0.23 -0.1
550,672 - Pf6N2E2_484 0.23 -0.1
550,743 + Pf6N2E2_484 0.31 -0.5
550,870 + Pf6N2E2_484 0.46 -0.8
550,871 - Pf6N2E2_484 0.46 -1.1
551,540 + -0.6
551,541 - -0.0
551,541 - -0.3
551,582 + +1.0
551,582 + +1.2
551,582 + -0.5
551,582 + +0.3
551,582 + +1.0
551,582 + +0.8
551,582 + -0.4
551,583 - +0.1
551,583 - +0.8
551,583 - -0.7
551,583 - -0.6
551,583 - -0.2
551,583 - +0.1
551,618 + -1.6
551,618 + -0.8
551,879 + Pf6N2E2_485 0.27 -0.1
551,948 + Pf6N2E2_485 0.32 +0.8
551,948 + Pf6N2E2_485 0.32 -0.5
551,949 - Pf6N2E2_485 0.32 +1.6
551,949 - Pf6N2E2_485 0.32 -0.4
552,006 + Pf6N2E2_485 0.36 +0.7
552,007 - Pf6N2E2_485 0.37 +0.2
552,007 - Pf6N2E2_485 0.37 +0.1
552,007 - Pf6N2E2_485 0.37 +0.5
552,042 - Pf6N2E2_485 0.39 -1.6
552,042 - Pf6N2E2_485 0.39 -0.8
552,050 + Pf6N2E2_485 0.40 +0.4
552,224 + Pf6N2E2_485 0.53 +0.3
552,225 - Pf6N2E2_485 0.54 +1.0
552,225 - Pf6N2E2_485 0.54 +0.3
552,225 - Pf6N2E2_485 0.54 +0.1
552,225 - Pf6N2E2_485 0.54 +1.0
552,225 - Pf6N2E2_485 0.54 -0.4

Or see this region's nucleotide sequence