Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3661

Experiment: N1B4wt with N2E2m denitrifying replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E2m denitrifying replicate B
4,262,144	-				-1.6
4,262,144	-				-3.3
4,262,144	-				-2.6
4,262,147	+				-2.0
4,262,147	+				-2.2
4,262,147	+				+1.0
4,262,148	-				+1.0
4,262,148	-				-0.8
4,262,148	-				-2.9
4,262,148	-				+1.0
4,262,148	-				-2.5
4,262,148	-				-2.8
4,262,190	+				-1.8
4,262,190	+				-1.0
4,262,191	-				-1.0
4,262,191	-				-2.9
4,262,252	+				-2.0
4,262,264	-				-0.8
4,262,279	+				-0.3
4,262,279	+				+1.0
4,262,295	-				+1.2
4,262,376	-				+0.2
4,262,377	+				-2.0
4,262,377	+				-1.6
4,262,377	+				-0.6
4,262,412	+				-1.2
4,262,412	+				-0.6
4,262,417	+				-3.6
4,262,417	+				-2.0
4,263,097	+				-0.2
4,263,097	+				-0.1
4,263,097	+				-0.1
4,263,216	-		Pf6N2E2_3661	0.12	-0.0
4,263,216	-		Pf6N2E2_3661	0.12	-0.6
4,263,216	-		Pf6N2E2_3661	0.12	-2.0
4,263,493	+		Pf6N2E2_3661	0.45	-2.2
4,263,493	+		Pf6N2E2_3661	0.45	-3.6
4,263,494	-		Pf6N2E2_3661	0.45	-0.0
4,263,494	-		Pf6N2E2_3661	0.45	-2.8
4,263,494	-		Pf6N2E2_3661	0.45	-2.7
4,263,563	-		Pf6N2E2_3661	0.53	-3.5
4,263,601	+		Pf6N2E2_3661	0.57	-3.2
4,263,601	+		Pf6N2E2_3661	0.57	-2.3
4,263,601	+		Pf6N2E2_3661	0.57	-3.2
4,263,602	-		Pf6N2E2_3661	0.57	-3.4
4,263,608	+		Pf6N2E2_3661	0.58	-3.5
4,263,609	-		Pf6N2E2_3661	0.58	-4.2
4,263,609	-		Pf6N2E2_3661	0.58	-2.0
4,263,609	-		Pf6N2E2_3661	0.58	-2.5
4,263,702	-		Pf6N2E2_3661	0.69	-4.7
4,263,720	-		Pf6N2E2_3661	0.71	-1.2
4,263,806	+		Pf6N2E2_3661	0.81	-2.2
4,263,962	+				-1.3
4,263,963	-				+1.0
4,263,995	+				-3.4
4,263,998	-				-1.8
4,263,998	-				-2.7
4,264,426	+				-2.0
4,264,427	-				-3.1
4,264,427	-				-1.2
4,264,475	-				-1.5
4,264,475	-				-3.9
4,264,495	+		Pf6N2E2_3663	0.11	-2.3
4,264,496	-		Pf6N2E2_3663	0.12	+1.0
4,264,667	+		Pf6N2E2_3663	0.30	-2.3
4,264,668	-		Pf6N2E2_3663	0.31	-3.4
4,264,668	-		Pf6N2E2_3663	0.31	-1.9
4,264,669	+		Pf6N2E2_3663	0.31	-3.3
4,264,670	-		Pf6N2E2_3663	0.31	-1.2
4,264,670	-		Pf6N2E2_3663	0.31	-2.0
4,264,670	-		Pf6N2E2_3663	0.31	-2.9
4,264,670	-		Pf6N2E2_3663	0.31	-3.0
4,264,670	-		Pf6N2E2_3663	0.31	-3.1
4,264,670	-		Pf6N2E2_3663	0.31	-2.9
4,264,768	+		Pf6N2E2_3663	0.42	-3.5
4,264,844	-		Pf6N2E2_3663	0.50	-2.1
4,264,941	-		Pf6N2E2_3663	0.61	-3.1