Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3460

Experiment: N1B4wt with N2E2m denitrifying replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3459 and Pf6N2E2_3460 overlap by 4 nucleotidesPf6N2E2_3460 and Pf6N2E2_3461 overlap by 4 nucleotides Pf6N2E2_3459 - Exodeoxyribonuclease V alpha chain (EC 3.1.11.5), at 4,028,252 to 4,029,406 _3459 Pf6N2E2_3460 - Exodeoxyribonuclease V beta chain (EC 3.1.11.5), at 4,029,403 to 4,033,092 _3460 Pf6N2E2_3461 - Exodeoxyribonuclease V gamma chain (EC 3.1.11.5), at 4,033,089 to 4,036,541 _3461 Position (kb) 4029 4030 4031 4032 4033 4034Strain fitness (log2 ratio) -1 0 1at 4029.406 kb on + strandat 4029.407 kb on - strandat 4029.407 kb on - strandat 4030.502 kb on - strand, within Pf6N2E2_3460at 4030.502 kb on - strand, within Pf6N2E2_3460

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Per-strain Table

Position Strand Gene LocusTag Fraction N1B4wt with N2E2m denitrifying replicate B
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4,029,406 + -0.8
4,029,407 - -0.6
4,029,407 - +0.5
4,030,502 - Pf6N2E2_3460 0.30 -1.5
4,030,502 - Pf6N2E2_3460 0.30 -0.0

Or see this region's nucleotide sequence