Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1463

Experiment: N1B4wt with N2E2m denitrifying replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E2m denitrifying replicate B
1,710,662	+				-0.2
1,710,769	+				-0.2
1,710,828	+				+1.5
1,710,828	+				-0.0
1,710,959	-				+0.1
1,710,992	+				+0.4
1,711,195	-		Pf6N2E2_1462	0.29	-0.0
1,711,195	-		Pf6N2E2_1462	0.29	-0.0
1,711,195	-		Pf6N2E2_1462	0.29	+0.9
1,711,383	-		Pf6N2E2_1462	0.65	+0.5
1,711,387	+		Pf6N2E2_1462	0.66	-1.2
1,711,453	+		Pf6N2E2_1462	0.78	+0.1
1,711,453	+		Pf6N2E2_1462	0.78	-0.1
1,711,453	+		Pf6N2E2_1462	0.78	+0.3
1,711,454	-		Pf6N2E2_1462	0.79	+0.4
1,711,454	-		Pf6N2E2_1462	0.79	-0.3
1,711,730	+		Pf6N2E2_1463	0.26	-0.6
1,711,730	+		Pf6N2E2_1463	0.26	-0.0
1,711,730	+		Pf6N2E2_1463	0.26	-0.0
1,711,731	-		Pf6N2E2_1463	0.26	-2.1
1,711,731	-		Pf6N2E2_1463	0.26	-1.3
1,712,225	+				+3.8
1,712,226	-				-0.5
1,712,265	+				-0.4
1,712,266	-				-1.7
1,712,266	-				+0.1
1,712,266	-				+1.3
1,712,527	+		Pf6N2E2_1464	0.54	-0.7
1,712,632	+		Pf6N2E2_1464	0.75	-0.5
1,712,632	+		Pf6N2E2_1464	0.75	-0.6
1,712,633	-		Pf6N2E2_1464	0.75	-0.2
1,712,633	-		Pf6N2E2_1464	0.75	+1.3
1,712,633	-		Pf6N2E2_1464	0.75	-0.7
1,712,677	+		Pf6N2E2_1464	0.83	-0.5
1,712,746	+				-0.0
1,712,746	+				-0.0
1,712,746	+				-0.1
1,712,747	-				-1.8
1,712,779	+				-0.2
1,712,780	-				-0.0
1,712,780	-				-1.6