Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5872

Experiment: Dimethyl Sulfoxide 6.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5870 and Pf1N1B4_5871 are separated by 37 nucleotidesPf1N1B4_5871 and Pf1N1B4_5872 overlap by 4 nucleotides Pf1N1B4_5870 - VgrG protein, at 303,515 to 305,557 _5870 Pf1N1B4_5871 - FIG00963848: hypothetical protein, at 305,595 to 306,290 _5871 Pf1N1B4_5872 - Rhs family protein, at 306,287 to 311,062 _5872 Position (kb) 306 307 308 309 310 311 312Strain fitness (log2 ratio) -2 -1 0 1 2 3at 305.485 kb on + strandat 305.485 kb on + strandat 305.489 kb on - strandat 305.930 kb on + strand, within Pf1N1B4_5871at 305.930 kb on + strand, within Pf1N1B4_5871at 305.930 kb on + strand, within Pf1N1B4_5871at 305.995 kb on - strand, within Pf1N1B4_5871at 306.002 kb on + strand, within Pf1N1B4_5871at 306.165 kb on + strand, within Pf1N1B4_5871at 306.165 kb on + strand, within Pf1N1B4_5871at 306.286 kb on + strandat 306.287 kb on - strandat 306.407 kb on + strandat 306.497 kb on + strandat 306.655 kb on - strandat 306.705 kb on - strandat 306.799 kb on - strand, within Pf1N1B4_5872at 306.844 kb on + strand, within Pf1N1B4_5872at 306.978 kb on - strand, within Pf1N1B4_5872at 306.978 kb on - strand, within Pf1N1B4_5872at 307.094 kb on + strand, within Pf1N1B4_5872at 307.094 kb on + strand, within Pf1N1B4_5872at 307.094 kb on + strand, within Pf1N1B4_5872at 307.248 kb on + strand, within Pf1N1B4_5872at 308.016 kb on - strand, within Pf1N1B4_5872at 308.116 kb on + strand, within Pf1N1B4_5872at 308.117 kb on - strand, within Pf1N1B4_5872at 308.390 kb on + strand, within Pf1N1B4_5872at 308.390 kb on + strand, within Pf1N1B4_5872at 308.472 kb on - strand, within Pf1N1B4_5872at 308.569 kb on - strandat 308.569 kb on - strandat 308.604 kb on - strand, within Pf1N1B4_5872at 308.667 kb on - strand, within Pf1N1B4_5872at 308.701 kb on + strandat 308.701 kb on + strand, within Pf1N1B4_5872at 308.780 kb on + strand, within Pf1N1B4_5872at 308.781 kb on - strand, within Pf1N1B4_5872at 308.786 kb on + strand, within Pf1N1B4_5872at 308.787 kb on - strandat 308.906 kb on + strand, within Pf1N1B4_5872at 308.906 kb on + strand, within Pf1N1B4_5872at 308.922 kb on + strand, within Pf1N1B4_5872at 309.038 kb on + strand, within Pf1N1B4_5872at 309.039 kb on - strand, within Pf1N1B4_5872at 309.039 kb on - strand, within Pf1N1B4_5872at 309.233 kb on + strand, within Pf1N1B4_5872at 309.296 kb on + strand, within Pf1N1B4_5872at 309.434 kb on + strand, within Pf1N1B4_5872at 309.434 kb on + strand, within Pf1N1B4_5872at 309.434 kb on + strand, within Pf1N1B4_5872at 309.434 kb on + strand, within Pf1N1B4_5872at 309.435 kb on - strand, within Pf1N1B4_5872at 309.435 kb on - strandat 309.555 kb on - strand, within Pf1N1B4_5872at 309.738 kb on - strandat 309.813 kb on - strand, within Pf1N1B4_5872at 309.875 kb on + strandat 309.876 kb on - strand, within Pf1N1B4_5872at 309.876 kb on - strand, within Pf1N1B4_5872at 309.876 kb on - strand, within Pf1N1B4_5872at 310.031 kb on + strand, within Pf1N1B4_5872at 310.032 kb on - strand, within Pf1N1B4_5872at 310.170 kb on - strand, within Pf1N1B4_5872at 310.170 kb on - strand, within Pf1N1B4_5872at 310.281 kb on - strandat 310.281 kb on - strand, within Pf1N1B4_5872at 310.287 kb on - strand, within Pf1N1B4_5872at 310.287 kb on - strand, within Pf1N1B4_5872at 310.287 kb on - strand, within Pf1N1B4_5872at 310.356 kb on - strand, within Pf1N1B4_5872at 310.356 kb on - strand, within Pf1N1B4_5872at 310.356 kb on - strand, within Pf1N1B4_5872at 310.359 kb on - strand, within Pf1N1B4_5872at 310.401 kb on - strand, within Pf1N1B4_5872at 310.430 kb on + strand, within Pf1N1B4_5872at 310.430 kb on + strand, within Pf1N1B4_5872at 310.431 kb on - strand, within Pf1N1B4_5872at 310.440 kb on - strand, within Pf1N1B4_5872at 310.503 kb on - strand, within Pf1N1B4_5872at 310.503 kb on - strand, within Pf1N1B4_5872at 310.524 kb on + strand, within Pf1N1B4_5872at 310.525 kb on - strand, within Pf1N1B4_5872at 310.525 kb on - strand, within Pf1N1B4_5872at 310.529 kb on + strandat 310.529 kb on + strand, within Pf1N1B4_5872at 310.529 kb on + strand, within Pf1N1B4_5872at 310.529 kb on + strand, within Pf1N1B4_5872at 310.530 kb on - strand, within Pf1N1B4_5872at 310.530 kb on - strand, within Pf1N1B4_5872at 310.547 kb on + strand, within Pf1N1B4_5872at 310.548 kb on - strand, within Pf1N1B4_5872at 310.548 kb on - strand, within Pf1N1B4_5872at 310.548 kb on - strandat 310.613 kb on + strandat 310.628 kb on - strandat 310.731 kb on + strandat 310.819 kb on - strandat 310.829 kb on - strandat 310.935 kb on + strandat 310.939 kb on - strandat 310.943 kb on + strandat 311.690 kb on - strandat 311.700 kb on - strandat 311.741 kb on + strandat 311.777 kb on - strandat 311.972 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6.5 vol%
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305,485 + -0.5
305,485 + -1.8
305,489 - +0.0
305,930 + Pf1N1B4_5871 0.48 +1.1
305,930 + Pf1N1B4_5871 0.48 +1.4
305,930 + Pf1N1B4_5871 0.48 -1.2
305,995 - Pf1N1B4_5871 0.57 +0.6
306,002 + Pf1N1B4_5871 0.58 +1.2
306,165 + Pf1N1B4_5871 0.82 -2.2
306,165 + Pf1N1B4_5871 0.82 +1.4
306,286 + -0.8
306,287 - -1.8
306,407 + +0.4
306,497 + -0.8
306,655 - +2.4
306,705 - +0.4
306,799 - Pf1N1B4_5872 0.11 -0.6
306,844 + Pf1N1B4_5872 0.12 +0.2
306,978 - Pf1N1B4_5872 0.14 -1.1
306,978 - Pf1N1B4_5872 0.14 -1.2
307,094 + Pf1N1B4_5872 0.17 +0.5
307,094 + Pf1N1B4_5872 0.17 +1.1
307,094 + Pf1N1B4_5872 0.17 -0.2
307,248 + Pf1N1B4_5872 0.20 +0.6
308,016 - Pf1N1B4_5872 0.36 +0.2
308,116 + Pf1N1B4_5872 0.38 -1.0
308,117 - Pf1N1B4_5872 0.38 +2.2
308,390 + Pf1N1B4_5872 0.44 -0.2
308,390 + Pf1N1B4_5872 0.44 -1.8
308,472 - Pf1N1B4_5872 0.46 +0.3
308,569 - -0.2
308,569 - +0.8
308,604 - Pf1N1B4_5872 0.49 -0.6
308,667 - Pf1N1B4_5872 0.50 +0.8
308,701 + +0.8
308,701 + Pf1N1B4_5872 0.51 -0.2
308,780 + Pf1N1B4_5872 0.52 -1.4
308,781 - Pf1N1B4_5872 0.52 +1.8
308,786 + Pf1N1B4_5872 0.52 -0.8
308,787 - -0.2
308,906 + Pf1N1B4_5872 0.55 +0.6
308,906 + Pf1N1B4_5872 0.55 +1.8
308,922 + Pf1N1B4_5872 0.55 -2.5
309,038 + Pf1N1B4_5872 0.58 +0.4
309,039 - Pf1N1B4_5872 0.58 -0.2
309,039 - Pf1N1B4_5872 0.58 -0.6
309,233 + Pf1N1B4_5872 0.62 +0.0
309,296 + Pf1N1B4_5872 0.63 -0.2
309,434 + Pf1N1B4_5872 0.66 -0.2
309,434 + Pf1N1B4_5872 0.66 +1.4
309,434 + Pf1N1B4_5872 0.66 -0.8
309,434 + Pf1N1B4_5872 0.66 -0.2
309,435 - Pf1N1B4_5872 0.66 -1.2
309,435 - +1.8
309,555 - Pf1N1B4_5872 0.68 +0.1
309,738 - -0.2
309,813 - Pf1N1B4_5872 0.74 +0.4
309,875 + +0.4
309,876 - Pf1N1B4_5872 0.75 +0.2
309,876 - Pf1N1B4_5872 0.75 -0.8
309,876 - Pf1N1B4_5872 0.75 -0.2
310,031 + Pf1N1B4_5872 0.78 +0.5
310,032 - Pf1N1B4_5872 0.78 -0.1
310,170 - Pf1N1B4_5872 0.81 +1.2
310,170 - Pf1N1B4_5872 0.81 +2.4
310,281 - -0.2
310,281 - Pf1N1B4_5872 0.84 +0.6
310,287 - Pf1N1B4_5872 0.84 -0.5
310,287 - Pf1N1B4_5872 0.84 -1.8
310,287 - Pf1N1B4_5872 0.84 +0.5
310,356 - Pf1N1B4_5872 0.85 -1.5
310,356 - Pf1N1B4_5872 0.85 -1.2
310,356 - Pf1N1B4_5872 0.85 -0.8
310,359 - Pf1N1B4_5872 0.85 -1.0
310,401 - Pf1N1B4_5872 0.86 +0.4
310,430 + Pf1N1B4_5872 0.87 +0.2
310,430 + Pf1N1B4_5872 0.87 +1.0
310,431 - Pf1N1B4_5872 0.87 -0.6
310,440 - Pf1N1B4_5872 0.87 +1.0
310,503 - Pf1N1B4_5872 0.88 +0.8
310,503 - Pf1N1B4_5872 0.88 -0.2
310,524 + Pf1N1B4_5872 0.89 -0.2
310,525 - Pf1N1B4_5872 0.89 -0.8
310,525 - Pf1N1B4_5872 0.89 +3.0
310,529 + -1.2
310,529 + Pf1N1B4_5872 0.89 +1.4
310,529 + Pf1N1B4_5872 0.89 +0.2
310,529 + Pf1N1B4_5872 0.89 +0.8
310,530 - Pf1N1B4_5872 0.89 +0.4
310,530 - Pf1N1B4_5872 0.89 +2.4
310,547 + Pf1N1B4_5872 0.89 +2.1
310,548 - Pf1N1B4_5872 0.89 +0.4
310,548 - Pf1N1B4_5872 0.89 +0.0
310,548 - +0.4
310,613 + +0.0
310,628 - -0.2
310,731 + +1.0
310,819 - -0.6
310,829 - +0.4
310,935 + +0.4
310,939 - -1.2
310,943 + +0.8
311,690 - +1.8
311,700 - -0.1
311,741 + +0.4
311,777 - -0.2
311,972 + -1.2

Or see this region's nucleotide sequence