Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3774

Experiment: Dimethyl Sulfoxide 6.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_3772 and Pf1N1B4_3773 are separated by 102 nucleotidesPf1N1B4_3773 and Pf1N1B4_3774 are separated by 77 nucleotidesPf1N1B4_3774 and Pf1N1B4_3775 are separated by 75 nucleotidesPf1N1B4_3775 and Pf1N1B4_3776 are separated by 131 nucleotides Pf1N1B4_3772 - Glutaredoxin, at 4,183,047 to 4,183,418 _3772 Pf1N1B4_3773 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 4,183,521 to 4,184,066 _3773 Pf1N1B4_3774 - Smr domain protein, at 4,184,144 to 4,184,701 _3774 Pf1N1B4_3775 - FIG00956876: hypothetical protein, at 4,184,777 to 4,185,097 _3775 Pf1N1B4_3776 - Isochorismatase (EC 3.3.2.1), at 4,185,229 to 4,185,819 _3776 Position (kb) 4184 4185Strain fitness (log2 ratio) -2 -1 0 1 2at 4183.282 kb on + strand, within Pf1N1B4_3772at 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.423 kb on + strandat 4183.423 kb on + strandat 4183.423 kb on + strandat 4183.458 kb on - strandat 4183.459 kb on - strandat 4183.522 kb on + strandat 4184.187 kb on + strandat 4184.331 kb on - strand, within Pf1N1B4_3774at 4184.331 kb on - strand, within Pf1N1B4_3774at 4184.872 kb on - strand, within Pf1N1B4_3775at 4184.872 kb on - strand, within Pf1N1B4_3775at 4184.872 kb on - strand, within Pf1N1B4_3775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6.5 vol%
remove
4,183,282 + Pf1N1B4_3772 0.63 -0.4
4,183,421 + +0.6
4,183,421 + -1.8
4,183,421 + +2.1
4,183,421 + -1.2
4,183,421 + -1.5
4,183,421 + +1.1
4,183,421 + +0.6
4,183,421 + -1.9
4,183,421 + +0.1
4,183,421 + -0.2
4,183,421 + -0.2
4,183,422 - -1.8
4,183,422 - +2.1
4,183,422 - +1.6
4,183,422 - -1.2
4,183,422 - -0.2
4,183,422 - -1.3
4,183,422 - +2.4
4,183,422 - +0.8
4,183,423 + +0.2
4,183,423 + +0.7
4,183,423 + +1.4
4,183,458 - -0.9
4,183,459 - +0.2
4,183,522 + -1.6
4,184,187 + -0.2
4,184,331 - Pf1N1B4_3774 0.34 -0.4
4,184,331 - Pf1N1B4_3774 0.34 -0.9
4,184,872 - Pf1N1B4_3775 0.30 -1.8
4,184,872 - Pf1N1B4_3775 0.30 -0.9
4,184,872 - Pf1N1B4_3775 0.30 -1.2

Or see this region's nucleotide sequence