Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08610

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,873,742	+				-3.6
1,873,742	+				-1.3
1,873,742	+				-1.7
1,873,742	+				-1.9
1,873,742	+				-1.0
1,873,742	+				-2.0
1,873,742	+				-1.9
1,873,742	+				-0.6
1,873,743	-				+0.1
1,873,743	-				+1.7
1,873,743	-				-0.6
1,873,743	-				+0.1
1,873,743	-				-1.1
1,874,181	-				-0.3
1,874,237	+		LRK54_RS08605	0.16	+0.2
1,874,237	+		LRK54_RS08605	0.16	+0.4
1,874,237	+		LRK54_RS08605	0.16	+0.7
1,874,238	-		LRK54_RS08605	0.16	+0.3
1,874,238	-		LRK54_RS08605	0.16	-0.1
1,874,414	+		LRK54_RS08605	0.48	+0.2
1,874,414	+		LRK54_RS08605	0.48	-0.7
1,874,414	+		LRK54_RS08605	0.48	+1.1
1,874,414	+		LRK54_RS08605	0.48	-0.5
1,874,414	+		LRK54_RS08605	0.48	+0.7
1,874,414	+		LRK54_RS08605	0.48	+0.5
1,874,414	+		LRK54_RS08605	0.48	-0.6
1,874,414	+		LRK54_RS08605	0.48	-0.3
1,874,414	+		LRK54_RS08605	0.48	-0.2
1,874,414	+		LRK54_RS08605	0.48	+0.3
1,874,415	-		LRK54_RS08605	0.49	-0.1
1,874,415	-		LRK54_RS08605	0.49	-0.9
1,874,415	-		LRK54_RS08605	0.49	-1.3
1,874,415	-		LRK54_RS08605	0.49	+1.7
1,874,415	-		LRK54_RS08605	0.49	-1.5
1,874,415	-		LRK54_RS08605	0.49	-0.9
1,874,415	-		LRK54_RS08605	0.49	+1.0
1,874,415	-		LRK54_RS08605	0.49	-1.1
1,874,415	-		LRK54_RS08605	0.49	-0.6
1,874,415	-		LRK54_RS08605	0.49	-1.0
1,874,415	-		LRK54_RS08605	0.49	+1.5
1,874,415	-		LRK54_RS08605	0.49	-0.1
1,874,415	-		LRK54_RS08605	0.49	+0.6
1,874,415	-		LRK54_RS08605	0.49	+0.7
1,874,415	-		LRK54_RS08605	0.49	-0.4
1,874,660	-				-0.2
1,874,660	-				+0.5
1,874,722	+				+0.2
1,874,722	+				-1.8
1,874,722	+				+0.3
1,874,722	+				-0.5
1,874,722	+				-0.6
1,874,722	+				+1.1
1,874,722	+				-1.9
1,874,722	+				-1.8
1,874,722	+				-1.3
1,874,722	+				+2.4
1,874,723	-				+1.0
1,874,723	-				-0.3
1,874,723	-				+0.3
1,874,723	-				-1.2
1,874,723	-				-0.8
1,874,723	-				+1.0
1,874,723	-				+0.9
1,874,723	-				+0.1
1,874,743	+				+0.9
1,874,743	+				-0.6
1,874,743	+				+0.5
1,874,743	+				+0.4
1,874,743	+				+0.3
1,874,743	+				-1.3
1,874,743	+				-0.1
1,874,743	+				+0.6
1,874,743	+				+1.4
1,874,743	+				-1.7
1,874,743	+				-0.0
1,874,743	+				-1.1
1,874,743	+				-0.5
1,874,743	+				-0.4
1,874,743	+				+1.1
1,874,744	-				+0.3
1,874,744	-				-1.4
1,874,744	-				-0.0
1,874,744	-				+0.7
1,874,744	-				+1.3
1,874,744	-				-0.2
1,874,744	-				-0.5
1,874,744	-				-1.5
1,874,744	-				-0.4
1,874,744	-				-1.4
1,874,744	-				+0.5
1,874,744	-				+0.3
1,874,744	-				-0.4
1,874,744	-				-1.1
1,874,744	-				-0.1
1,874,744	-				+0.2
1,874,744	-				-0.4
1,874,744	-				+0.3
1,874,744	-				-1.6
1,874,744	-				-0.4
1,874,744	-				+0.4
1,874,744	-				+0.1
1,874,744	-				-0.3
1,874,744	-				+0.4
1,874,744	-				+0.2
1,874,744	-				-0.0
1,874,744	-				-0.7
1,874,744	-				-0.8
1,874,744	-				+0.1
1,874,744	-				-0.4
1,874,744	-				+0.0
1,874,758	+				+0.2
1,874,758	+				-0.9
1,874,758	+				-1.1
1,874,758	+				+0.4
1,874,759	-				+0.1
1,874,759	-				-0.1
1,874,759	-				-1.8
1,874,759	-				-0.2
1,874,759	-				+0.3
1,874,759	-				-0.4
1,874,938	+		LRK54_RS08610	0.43	-0.9
1,874,938	+		LRK54_RS08610	0.43	-0.0
1,874,938	+		LRK54_RS08610	0.43	+1.7
1,874,938	+		LRK54_RS08610	0.43	+1.7
1,874,939	-		LRK54_RS08610	0.44	+1.3
1,874,939	-		LRK54_RS08610	0.44	-0.1
1,874,939	-		LRK54_RS08610	0.44	+0.8
1,874,939	-		LRK54_RS08610	0.44	+1.4
1,874,939	-		LRK54_RS08610	0.44	-2.5
1,874,939	-		LRK54_RS08610	0.44	-1.5
1,875,010	+		LRK54_RS08610	0.57	+0.4
1,875,022	+		LRK54_RS08610	0.59	+0.3
1,875,023	-		LRK54_RS08610	0.59	+0.1
1,875,089	+		LRK54_RS08610	0.72	+0.8
1,875,089	+		LRK54_RS08610	0.72	-0.3
1,875,089	+		LRK54_RS08610	0.72	-2.4
1,875,089	+		LRK54_RS08610	0.72	-0.2
1,875,090	-		LRK54_RS08610	0.72	+1.0
1,875,090	-		LRK54_RS08610	0.72	-0.2
1,875,090	-		LRK54_RS08610	0.72	-0.2
1,875,090	-		LRK54_RS08610	0.72	+2.4
1,875,090	-		LRK54_RS08610	0.72	-0.3
1,875,090	-		LRK54_RS08610	0.72	-0.8
1,875,184	+		LRK54_RS08610	0.90	+1.0
1,875,184	+		LRK54_RS08610	0.90	+2.3
1,875,184	+		LRK54_RS08610	0.90	-0.0
1,875,184	+		LRK54_RS08610	0.90	-0.3
1,875,185	-		LRK54_RS08610	0.90	-0.1
1,875,185	-		LRK54_RS08610	0.90	+0.5
1,875,185	-		LRK54_RS08610	0.90	+1.0
1,875,185	-		LRK54_RS08610	0.90	+0.4
1,875,185	-		LRK54_RS08610	0.90	-0.9
1,875,250	+				-1.3
1,875,250	+				+1.5
1,875,250	+				-0.0
1,875,250	+				-0.9
1,875,250	+				+0.7
1,875,250	+				-0.5
1,875,251	-				+0.0
1,875,251	-				-0.4
1,875,251	-				-0.6
1,875,251	-				+0.9
1,875,429	+				+2.7
1,875,430	-				-0.8
1,875,588	+		LRK54_RS08615	0.13	-0.1
1,875,588	+		LRK54_RS08615	0.13	-0.5
1,875,588	+		LRK54_RS08615	0.13	-1.1
1,875,588	+		LRK54_RS08615	0.13	-0.8
1,875,588	+		LRK54_RS08615	0.13	-1.4
1,875,588	+		LRK54_RS08615	0.13	+0.1
1,875,588	+		LRK54_RS08615	0.13	-1.6
1,875,589	-		LRK54_RS08615	0.13	-1.9
1,875,589	-		LRK54_RS08615	0.13	+1.6
1,875,589	-		LRK54_RS08615	0.13	-1.7
1,875,589	-		LRK54_RS08615	0.13	-0.5
1,875,589	-		LRK54_RS08615	0.13	-2.0
1,875,589	-		LRK54_RS08615	0.13	-1.1
1,875,651	+		LRK54_RS08615	0.16	-1.8
1,875,651	+		LRK54_RS08615	0.16	-0.6
1,875,651	+		LRK54_RS08615	0.16	-1.6
1,875,651	+		LRK54_RS08615	0.16	-1.2
1,875,651	+		LRK54_RS08615	0.16	+0.7
1,875,651	+		LRK54_RS08615	0.16	-0.8
1,875,651	+		LRK54_RS08615	0.16	-2.4
1,875,651	+		LRK54_RS08615	0.16	-0.5
1,875,651	+		LRK54_RS08615	0.16	-0.2
1,875,651	+		LRK54_RS08615	0.16	-1.0
1,875,651	+		LRK54_RS08615	0.16	-0.8
1,875,651	+		LRK54_RS08615	0.16	-0.1
1,875,651	+		LRK54_RS08615	0.16	+0.7
1,875,651	+		LRK54_RS08615	0.16	-1.5
1,875,651	+		LRK54_RS08615	0.16	+1.3
1,875,652	-		LRK54_RS08615	0.16	-1.3
1,875,652	-		LRK54_RS08615	0.16	-1.5
1,875,933	+		LRK54_RS08615	0.29	-0.2
1,875,933	+		LRK54_RS08615	0.29	+0.4
1,875,933	+		LRK54_RS08615	0.29	+0.4
1,875,933	+		LRK54_RS08615	0.29	-0.3
1,875,933	+		LRK54_RS08615	0.29	-0.1
1,875,933	+		LRK54_RS08615	0.29	-0.8
1,875,934	-		LRK54_RS08615	0.29	-1.7
1,875,934	-		LRK54_RS08615	0.29	-0.3
1,875,960	+		LRK54_RS08615	0.31	-1.0
1,875,960	+		LRK54_RS08615	0.31	-0.6
1,875,961	-		LRK54_RS08615	0.31	-0.9
1,875,961	-		LRK54_RS08615	0.31	-1.1
1,875,961	-		LRK54_RS08615	0.31	-0.2
1,876,005	+		LRK54_RS08615	0.33	-0.9
1,876,005	+		LRK54_RS08615	0.33	+0.4
1,876,005	+		LRK54_RS08615	0.33	-0.4
1,876,005	+		LRK54_RS08615	0.33	+1.0
1,876,005	+		LRK54_RS08615	0.33	-1.0
1,876,005	+		LRK54_RS08615	0.33	+0.2
1,876,005	+		LRK54_RS08615	0.33	+0.4
1,876,005	+		LRK54_RS08615	0.33	-1.1
1,876,005	+		LRK54_RS08615	0.33	+1.7
1,876,005	+		LRK54_RS08615	0.33	-0.6
1,876,005	+		LRK54_RS08615	0.33	-0.4
1,876,005	+		LRK54_RS08615	0.33	-0.3
1,876,005	+		LRK54_RS08615	0.33	+1.0
1,876,005	+		LRK54_RS08615	0.33	+0.7
1,876,005	+		LRK54_RS08615	0.33	-0.5
1,876,005	+		LRK54_RS08615	0.33	-0.0
1,876,005	+		LRK54_RS08615	0.33	-2.0
1,876,005	+		LRK54_RS08615	0.33	+1.4
1,876,005	+		LRK54_RS08615	0.33	-0.5
1,876,005	+		LRK54_RS08615	0.33	-1.7
1,876,005	+		LRK54_RS08615	0.33	-0.8
1,876,005	+		LRK54_RS08615	0.33	-1.1
1,876,005	+		LRK54_RS08615	0.33	-1.7
1,876,005	+		LRK54_RS08615	0.33	-1.5
1,876,005	+		LRK54_RS08615	0.33	-0.6
1,876,005	+		LRK54_RS08615	0.33	+0.3
1,876,005	+		LRK54_RS08615	0.33	-1.0
1,876,005	+		LRK54_RS08615	0.33	+0.1
1,876,006	-		LRK54_RS08615	0.33	-1.6
1,876,006	-		LRK54_RS08615	0.33	+0.7
1,876,006	-		LRK54_RS08615	0.33	-1.5
1,876,006	-		LRK54_RS08615	0.33	-0.9
1,876,006	-		LRK54_RS08615	0.33	-1.3
1,876,006	-		LRK54_RS08615	0.33	-0.3
1,876,006	-		LRK54_RS08615	0.33	-1.4
1,876,006	-		LRK54_RS08615	0.33	-0.1
1,876,006	-		LRK54_RS08615	0.33	-2.1
1,876,006	-		LRK54_RS08615	0.33	-0.5
1,876,006	-		LRK54_RS08615	0.33	-0.6
1,876,006	-		LRK54_RS08615	0.33	-0.2
1,876,006	-		LRK54_RS08615	0.33	-0.6
1,876,006	-		LRK54_RS08615	0.33	-0.6
1,876,006	-		LRK54_RS08615	0.33	-1.7
1,876,006	-		LRK54_RS08615	0.33	-0.9
1,876,006	-		LRK54_RS08615	0.33	-2.2
1,876,006	-		LRK54_RS08615	0.33	-2.0
1,876,006	-		LRK54_RS08615	0.33	-0.8
1,876,006	-		LRK54_RS08615	0.33	-0.3
1,876,006	-		LRK54_RS08615	0.33	-0.9
1,876,006	-		LRK54_RS08615	0.33	-1.3
1,876,006	-		LRK54_RS08615	0.33	-1.1
1,876,038	+		LRK54_RS08615	0.35	-1.1
1,876,038	+		LRK54_RS08615	0.35	-0.6
1,876,038	+		LRK54_RS08615	0.35	-0.7
1,876,038	+		LRK54_RS08615	0.35	-3.4
1,876,038	+		LRK54_RS08615	0.35	-0.9
1,876,038	+		LRK54_RS08615	0.35	-0.3
1,876,038	+		LRK54_RS08615	0.35	-1.5
1,876,038	+		LRK54_RS08615	0.35	-1.1
1,876,038	+		LRK54_RS08615	0.35	+0.4
1,876,038	+		LRK54_RS08615	0.35	-0.4
1,876,038	+		LRK54_RS08615	0.35	+0.4
1,876,038	+		LRK54_RS08615	0.35	-1.5
1,876,039	-		LRK54_RS08615	0.35	-0.3
1,876,039	-		LRK54_RS08615	0.35	-2.2
1,876,039	-		LRK54_RS08615	0.35	+0.3
1,876,039	-		LRK54_RS08615	0.35	-0.2
1,876,039	-		LRK54_RS08615	0.35	-0.8
1,876,039	-		LRK54_RS08615	0.35	-1.1
1,876,039	-		LRK54_RS08615	0.35	-1.2
1,876,039	-		LRK54_RS08615	0.35	-1.1
1,876,047	+		LRK54_RS08615	0.35	-1.5
1,876,047	+		LRK54_RS08615	0.35	+1.7
1,876,047	+		LRK54_RS08615	0.35	-1.2
1,876,048	-		LRK54_RS08615	0.35	+0.1
1,876,048	-		LRK54_RS08615	0.35	-1.9
1,876,048	-		LRK54_RS08615	0.35	-0.2
1,876,048	-		LRK54_RS08615	0.35	-0.7
1,876,048	-		LRK54_RS08615	0.35	-0.6